[INFO] fetching crate zoe 0.0.22... [INFO] testing zoe-0.0.22 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate zoe 0.0.22 into /workspace/builds/worker-2-tc1/source [INFO] removed /workspace/builds/worker-2-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate zoe 0.0.22 [INFO] finished tweaking crates.io crate zoe 0.0.22 [INFO] tweaked toml for crates.io crate zoe 0.0.22 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate zoe 0.0.22 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate zoe 0.0.22 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rand_xoshiro v0.7.0 [INFO] [stderr] Downloaded itoa v1.0.15 [INFO] [stderr] Downloaded multiversion-macros v0.8.0 [INFO] [stderr] Downloaded multiversion v0.8.0 [INFO] [stderr] Downloaded arbitrary v1.4.2 [INFO] [stderr] Downloaded rand_core v0.9.3 [INFO] [stderr] Downloaded syn v2.0.106 [INFO] [stderr] Downloaded derive_arbitrary v1.4.2 [INFO] [stderr] Downloaded target-features v0.1.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8878c01fd95a0cf4ebfe4dc1979b6eafe8619f8a75ee89c114042e69e4019dbe [INFO] running `Command { std: "docker" "start" "-a" "8878c01fd95a0cf4ebfe4dc1979b6eafe8619f8a75ee89c114042e69e4019dbe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8878c01fd95a0cf4ebfe4dc1979b6eafe8619f8a75ee89c114042e69e4019dbe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8878c01fd95a0cf4ebfe4dc1979b6eafe8619f8a75ee89c114042e69e4019dbe", kill_on_drop: false }` [INFO] [stdout] 8878c01fd95a0cf4ebfe4dc1979b6eafe8619f8a75ee89c114042e69e4019dbe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a3a635db8576947b93d4a80822717b220b8002e4d39a2598676779d4e740b50 [INFO] running `Command { std: "docker" "start" "-a" "0a3a635db8576947b93d4a80822717b220b8002e4d39a2598676779d4e740b50", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling rand_xoshiro v0.7.0 [INFO] [stderr] Compiling zoe v0.0.22 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.04s [INFO] running `Command { std: "docker" "inspect" "0a3a635db8576947b93d4a80822717b220b8002e4d39a2598676779d4e740b50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a3a635db8576947b93d4a80822717b220b8002e4d39a2598676779d4e740b50", kill_on_drop: false }` [INFO] [stdout] 0a3a635db8576947b93d4a80822717b220b8002e4d39a2598676779d4e740b50 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 776c3820291100069203ca0da34dc5886d7dfd614236280e8d24fd490542ca5b [INFO] running `Command { std: "docker" "start" "-a" "776c3820291100069203ca0da34dc5886d7dfd614236280e8d24fd490542ca5b", kill_on_drop: false }` [INFO] [stderr] Compiling zoe v0.0.22 (/opt/rustwide/workdir) [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_007362.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/mod.rs:328:42 [INFO] [stdout] | [INFO] [stdout] 328 | pub(crate) static REFERENCE: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_007362.1.txt")); // H5 HA [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_026433.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/mod.rs:329:38 [INFO] [stdout] | [INFO] [stdout] 329 | pub(crate) static QUERY: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_026433.1.txt")); // H1 HA1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/test.rs:261:20 [INFO] [stdout] | [INFO] [stdout] 261 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/test.rs:291:20 [INFO] [stdout] | [INFO] [stdout] 291 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile.rs:580:37 [INFO] [stdout] | [INFO] [stdout] 580 | pub(crate) static DATA: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, complete... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile_set.rs:582:24 [INFO] [stdout] | [INFO] [stdout] 582 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907623.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:5:40 [INFO] [stdout] | [INFO] [stdout] 5 | pub(crate) static LONG_READ_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907623.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:6:40 [INFO] [stdout] | [INFO] [stdout] 6 | pub(crate) static LONG_READ_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KP326324.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:12:33 [INFO] [stdout] | [INFO] [stdout] 12 | static MID_READ_GAPS_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KP326324.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KC684446.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:13:33 [INFO] [stdout] | [INFO] [stdout] 13 | static MID_READ_GAPS_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KC684446.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `zoe` (lib test) due to 10 previous errors [INFO] running `Command { std: "docker" "inspect" "776c3820291100069203ca0da34dc5886d7dfd614236280e8d24fd490542ca5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "776c3820291100069203ca0da34dc5886d7dfd614236280e8d24fd490542ca5b", kill_on_drop: false }` [INFO] [stdout] 776c3820291100069203ca0da34dc5886d7dfd614236280e8d24fd490542ca5b