[INFO] fetching crate tskit_rust 0.1.0... [INFO] testing tskit_rust-0.1.0 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate tskit_rust 0.1.0 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate tskit_rust 0.1.0 [INFO] finished tweaking crates.io crate tskit_rust 0.1.0 [INFO] tweaked toml for crates.io crate tskit_rust 0.1.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate tskit_rust 0.1.0 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 55 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.56.0 (available: v0.72.1) [INFO] [stderr] Adding thiserror v1.0.69 (available: v2.0.17) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cexpr v0.4.0 [INFO] [stderr] Downloaded env_logger v0.8.4 [INFO] [stderr] Downloaded which v3.1.1 [INFO] [stderr] Downloaded nom v5.1.3 [INFO] [stderr] Downloaded bindgen v0.56.0 [INFO] [stderr] Downloaded shlex v0.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4be56ad66c9edc15963380d8eeb7107655bd7f33ab0558a932deecaa0171019b [INFO] running `Command { std: "docker" "start" "-a" "4be56ad66c9edc15963380d8eeb7107655bd7f33ab0558a932deecaa0171019b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4be56ad66c9edc15963380d8eeb7107655bd7f33ab0558a932deecaa0171019b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4be56ad66c9edc15963380d8eeb7107655bd7f33ab0558a932deecaa0171019b", kill_on_drop: false }` [INFO] [stdout] 4be56ad66c9edc15963380d8eeb7107655bd7f33ab0558a932deecaa0171019b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0db05bc1891c8caefd9d8d4c03b5bc4a709a8cf257ca02c184bce5d31cc0ce19 [INFO] running `Command { std: "docker" "start" "-a" "0db05bc1891c8caefd9d8d4c03b5bc4a709a8cf257ca02c184bce5d31cc0ce19", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.176 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling cfg-if v1.0.3 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling humantime v2.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling bindgen v0.56.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling cc v1.2.39 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex-automata v0.4.11 [INFO] [stderr] Compiling regex v1.11.3 [INFO] [stderr] Compiling env_logger v0.8.4 [INFO] [stderr] Compiling tskit_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `tskit_rust v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/tskit_rust-f9e1ee19965c9cad/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/tskit_rust-02ddd4a486b57139/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64-unknown-linux-gnu [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64_unknown_linux_gnu [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CC [INFO] [stderr] HOST_CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC [INFO] [stderr] CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS [INFO] [stderr] CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CFLAGS [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rerun-if-env-changed=AR_x86_64-unknown-linux-gnu [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=AR_x86_64_unknown_linux_gnu [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_AR [INFO] [stderr] HOST_AR = None [INFO] [stderr] cargo:rerun-if-env-changed=AR [INFO] [stderr] AR = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS [INFO] [stderr] ARFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_ARFLAGS [INFO] [stderr] HOST_ARFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] ARFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] ARFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rustc-link-lib=static=tskit [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/tskit_rust-02ddd4a486b57139/out [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/core.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/math.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features-time64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/timesize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdc-predef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/sys/cdefs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/long-double.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/gnu/stubs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/gnu/stubs-64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/timesize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/typesizes.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/time64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/math-vector.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn-common.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/long-double.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/flt-eval-method.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/fp-logb.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/fp-fast.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wchar.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-intn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-uintn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-least.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stddef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_size_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_null.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdarg.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stdarg___gnuc_va_list.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdio_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/posix1_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/local_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/linux/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/pthread_stack_min.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/posix2_lim.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/tables.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/kastore/kastore.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stddef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_ptrdiff_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_size_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_wchar_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_null.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_max_align_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_offsetof.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/core.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/genotypes.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/convert.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/stats.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/haplotype_matching.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' (471) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bindgen-0.56.0/src/ir/context.rs:846:9: [INFO] [stderr] "tsk_table_collection_t_struct_(unnamed_at_subprojects/tskit/tskit/tables_h_589_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55583d4d78e2 - std::backtrace_rs::backtrace::libunwind::trace::h76861be37b31432e [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x55583d4d78e2 - std::backtrace_rs::backtrace::trace_unsynchronized::h58d4003082192c17 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x55583d4d78e2 - std::sys::backtrace::_print_fmt::hfe5857a399620d2a [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x55583d4d78e2 - ::fmt::h52160e9da139e442 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x55583d4e99bf - core::fmt::rt::Argument::fmt::h66fe6fef9ecca14a [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x55583d4e99bf - core::fmt::write::hf09a056a304e021a [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x55583d4a09a1 - std::io::default_write_fmt::h7567c5950fb0173c [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x55583d4a09a1 - std::io::Write::write_fmt::h361c7127187cda65 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x55583d4ae232 - std::sys::backtrace::BacktraceLock::print::h15104dbcf0fd1f14 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x55583d4b3b6f - std::panicking::default_hook::{{closure}}::h0fa6cd8dbe0dd76b [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x55583d4b39c9 - std::panicking::default_hook::h8d20506cf72e4831 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x55583d4b42a5 - std::panicking::panic_with_hook::h746880a052e02c85 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x55583d4b408a - std::panicking::panic_handler::{{closure}}::h14b95830f89d14b3 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x55583d4ae369 - std::sys::backtrace::__rust_end_short_backtrace::h7ddaac0e9609a83d [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x55583d4949ed - __rustc[76f7e7187978e2f8]::rust_begin_unwind [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x55583d4f3f00 - core::panicking::panic_fmt::heb245a301f4395db [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/core/src/panicking.rs:78:14 [INFO] [stderr] 16: 0x55583d4705ef - proc_macro2::fallback::validate_ident::ha17db27d3fb60914 [INFO] [stderr] 17: 0x55583d470d18 - proc_macro2::fallback::Ident::new_checked::hca7ae6db125ea045 [INFO] [stderr] 18: 0x55583d473fd2 - proc_macro2::imp::Ident::new_checked::he0e60736064ec453 [INFO] [stderr] 19: 0x55583d4812b7 - proc_macro2::Ident::new::h5321f86c2504b22d [INFO] [stderr] 20: 0x55583d0a0736 - bindgen::ir::context::BindgenContext::rust_ident_raw::h6bfd61e015aba2d1 [INFO] [stderr] 21: 0x55583d09e540 - bindgen::ir::context::BindgenContext::rust_ident::h93335273910ad56b [INFO] [stderr] 22: 0x55583d117680 - ::codegen::ha43a781498bc3d4a [INFO] [stderr] 23: 0x55583d017115 - ::codegen::he381b0305c319f07 [INFO] [stderr] 24: 0x55583d0e00e7 - ::codegen::h14cd7872ac9b26d3 [INFO] [stderr] 25: 0x55583d11d958 - ::codegen::ha43a781498bc3d4a [INFO] [stderr] 26: 0x55583d017115 - ::codegen::he381b0305c319f07 [INFO] [stderr] 27: 0x55583d0e00e7 - ::codegen::h14cd7872ac9b26d3 [INFO] [stderr] 28: 0x55583d033cf5 - ::codegen::{{closure}}::ha18c9ae5ba99aac6 [INFO] [stderr] 29: 0x55583cff7d7f - ::codegen::h0005da5fdbfe12be [INFO] [stderr] 30: 0x55583d0e00bf - ::codegen::h14cd7872ac9b26d3 [INFO] [stderr] 31: 0x55583d04075d - bindgen::codegen::codegen::{{closure}}::h69bbb7dc7083548c [INFO] [stderr] 32: 0x55583d0ac208 - bindgen::ir::context::BindgenContext::gen::h84cfa3c534571fa8 [INFO] [stderr] 33: 0x55583d03fe9d - bindgen::codegen::codegen::h2ab4caba9266b884 [INFO] [stderr] 34: 0x55583d0c0c2c - bindgen::Bindings::generate::h9246bb9209fc88be [INFO] [stderr] 35: 0x55583d0bd6f1 - bindgen::Builder::generate::h1f23777b766d00de [INFO] [stderr] 36: 0x55583cf4411c - build_script_build::main::h90f2d1c50d110084 [INFO] [stderr] 37: 0x55583cf44c03 - core::ops::function::FnOnce::call_once::h9dc0b12e50454547 [INFO] [stderr] 38: 0x55583cf44b56 - std::sys::backtrace::__rust_begin_short_backtrace::hd9d16c37976cc20b [INFO] [stderr] 39: 0x55583cf44b39 - std::rt::lang_start::{{closure}}::hd73f2af6289aded5 [INFO] [stderr] 40: 0x55583d4a2670 - core::ops::function::impls:: for &F>::call_once::h92f7271baace0227 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 41: 0x55583d4a2670 - std::panicking::catch_unwind::do_call::hab80bc7615f9a56f [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x55583d4a2670 - std::panicking::catch_unwind::h44920ff533ed11dd [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x55583d4a2670 - std::panic::catch_unwind::hbc4760794652046f [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x55583d4a2670 - std::rt::lang_start_internal::{{closure}}::h017b9ee7d9dfccf2 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x55583d4a2670 - std::panicking::catch_unwind::do_call::h5c448dae61c3a22b [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x55583d4a2670 - std::panicking::catch_unwind::ha3a2750d16137715 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x55583d4a2670 - std::panic::catch_unwind::ha56344eb931bca1a [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x55583d4a2670 - std::rt::lang_start_internal::h4e6c18fadc4e7470 [INFO] [stderr] at /rustc/caccb4d0368bd918ef6668af8e13834d07040417/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x55583cf44b21 - std::rt::lang_start::ha525c527607c23e4 [INFO] [stderr] 50: 0x55583cf45fc5 - main [INFO] [stderr] 51: 0x7f2f5e6e01ca - [INFO] [stderr] 52: 0x7f2f5e6e028b - __libc_start_main [INFO] [stderr] 53: 0x55583cf439d5 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "0db05bc1891c8caefd9d8d4c03b5bc4a709a8cf257ca02c184bce5d31cc0ce19", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0db05bc1891c8caefd9d8d4c03b5bc4a709a8cf257ca02c184bce5d31cc0ce19", kill_on_drop: false }` [INFO] [stdout] 0db05bc1891c8caefd9d8d4c03b5bc4a709a8cf257ca02c184bce5d31cc0ce19