[INFO] fetching crate sketchlib 0.2.4... [INFO] testing sketchlib-0.2.4 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate sketchlib 0.2.4 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate sketchlib 0.2.4 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate sketchlib 0.2.4 [INFO] tweaked toml for crates.io crate sketchlib 0.2.4 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate sketchlib 0.2.4 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate sketchlib 0.2.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snapbox-macros v0.3.10 [INFO] [stderr] Downloaded simple_logger v4.3.3 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded pyo3-build-config v0.22.6 [INFO] [stderr] Downloaded snapbox v0.6.21 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ed05bcb4980be049279d0b5f4af20150fd748fa2828181bbbf40a2a0f5ead2a7 [INFO] running `Command { std: "docker" "start" "-a" "ed05bcb4980be049279d0b5f4af20150fd748fa2828181bbbf40a2a0f5ead2a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ed05bcb4980be049279d0b5f4af20150fd748fa2828181bbbf40a2a0f5ead2a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed05bcb4980be049279d0b5f4af20150fd748fa2828181bbbf40a2a0f5ead2a7", kill_on_drop: false }` [INFO] [stdout] ed05bcb4980be049279d0b5f4af20150fd748fa2828181bbbf40a2a0f5ead2a7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 50e659cc607959b61271f04215e5eb26776e64524940acc4cd35e26dd809514c [INFO] running `Command { std: "docker" "start" "-a" "50e659cc607959b61271f04215e5eb26776e64524940acc4cd35e26dd809514c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.97 [INFO] [stderr] Compiling cc v1.2.32 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling time-macros v0.2.22 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling half v2.6.0 [INFO] [stderr] Compiling num_threads v0.1.7 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling anyhow v1.0.99 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling colored v2.2.0 [INFO] [stderr] Compiling rmp v0.8.14 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling anstream v0.6.20 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling memmap2 v0.9.7 [INFO] [stderr] Compiling clap_builder v4.5.44 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling time v0.3.41 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling syn v2.0.105 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling simple_logger v4.3.3 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling clap_derive v4.5.45 [INFO] [stderr] Compiling clap v4.5.45 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling roaring v0.10.12 [INFO] [stderr] Compiling rmp-serde v1.3.0 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling sketchlib v0.2.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.05s [INFO] running `Command { std: "docker" "inspect" "50e659cc607959b61271f04215e5eb26776e64524940acc4cd35e26dd809514c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50e659cc607959b61271f04215e5eb26776e64524940acc4cd35e26dd809514c", kill_on_drop: false }` [INFO] [stdout] 50e659cc607959b61271f04215e5eb26776e64524940acc4cd35e26dd809514c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 94c40ac67bd700d2d68bb5c98f7f235a7a6729c3d0f742a5ece385510bcbb436 [INFO] running `Command { std: "docker" "start" "-a" "94c40ac67bd700d2d68bb5c98f7f235a7a6729c3d0f742a5ece385510bcbb436", kill_on_drop: false }` [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling predicates v3.1.3 [INFO] [stderr] Compiling snapbox-macros v0.3.10 [INFO] [stderr] Compiling diff v0.1.13 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling snapbox v0.6.21 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling globset v0.4.16 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling predicates v2.1.5 [INFO] [stderr] Compiling ignore v0.4.23 [INFO] [stderr] Compiling sketchlib v0.2.4 (/opt/rustwide/workdir) [INFO] [stderr] Compiling globwalk v0.9.1 [INFO] [stderr] Compiling assert_fs v1.1.3 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 20.67s [INFO] running `Command { std: "docker" "inspect" "94c40ac67bd700d2d68bb5c98f7f235a7a6729c3d0f742a5ece385510bcbb436", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "94c40ac67bd700d2d68bb5c98f7f235a7a6729c3d0f742a5ece385510bcbb436", kill_on_drop: false }` [INFO] [stdout] 94c40ac67bd700d2d68bb5c98f7f235a7a6729c3d0f742a5ece385510bcbb436 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 134194760fe396aafe282b5917e8eb84336f045580301f7db088d206ae39b72a [INFO] running `Command { std: "docker" "start" "-a" "134194760fe396aafe282b5917e8eb84336f045580301f7db088d206ae39b72a", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sketchlib-649a31545b46d4cf) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test io::test_reorder_input_files ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sketchlib-4a2e8ba74fd452c0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/completeness.rs (/opt/rustwide/target/debug/deps/completeness-bcb81881f94d26fa) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test tests::test_completeness_extra_genomes ... ok [INFO] [stdout] test tests::test_completeness_correction_formula_exact ... ok [INFO] [stdout] test tests::test_completeness_ordering ... ok [INFO] [stdout] test tests::test_completeness_missing_genomes ... ok [INFO] [stdout] test tests::test_completeness_precluster ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.14s [INFO] [stdout] [INFO] [stderr] Running tests/concat.rs (/opt/rustwide/target/debug/deps/concat-87136052e06168df) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_concat_sketches ... ok [INFO] [stderr] Running tests/delete.rs (/opt/rustwide/target/debug/deps/delete-10c529dd73b536bd) [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 7.90s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Running tests/distance.rs (/opt/rustwide/target/debug/deps/distance-f0b480a7568fcd30) [INFO] [stdout] test tests::test_delete_sketches ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 4.24s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test tests::dense_distances ... ok [INFO] [stdout] test tests::knn_dists ... ok [INFO] [stdout] test tests::subset_dists ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 10.41s [INFO] [stdout] [INFO] [stderr] Running tests/inverted.rs (/opt/rustwide/target/debug/deps/inverted-85d9c01d0c74f16a) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test tests::inverted_sketch ... ok [INFO] [stdout] test tests::inverted_reorder ... ok [INFO] [stdout] test tests::inverted_precluster ... ok [INFO] [stdout] test tests::inverted_query ... ok [INFO] [stderr] Running tests/merge.rs (/opt/rustwide/target/debug/deps/merge-2c3cf4bd02d6bde7) [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 11.65s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test tests::test_is_compatible_with ... ok [INFO] [stderr] Running tests/sketch.rs (/opt/rustwide/target/debug/deps/sketch-dfdc8fe8500b8a78) [INFO] [stdout] test tests::test_merge_sketches ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 6.06s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test tests::sketch_fastq ... ok [INFO] [stdout] test tests::sketch_fasta ... ok [INFO] [stdout] test tests::legacy_databases ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.36s [INFO] [stdout] [INFO] [stderr] Doc-tests sketchlib [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "134194760fe396aafe282b5917e8eb84336f045580301f7db088d206ae39b72a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "134194760fe396aafe282b5917e8eb84336f045580301f7db088d206ae39b72a", kill_on_drop: false }` [INFO] [stdout] 134194760fe396aafe282b5917e8eb84336f045580301f7db088d206ae39b72a