[INFO] fetching crate sfs-cli 0.1.0...
[INFO] testing sfs-cli-0.1.0 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1
[INFO] extracting crate sfs-cli 0.1.0 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate sfs-cli 0.1.0
[INFO] finished tweaking crates.io crate sfs-cli 0.1.0
[INFO] tweaked toml for crates.io crate sfs-cli 0.1.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate sfs-cli 0.1.0 on toolchain caccb4d0368bd918ef6668af8e13834d07040417
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate sfs-cli 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_derive v1.0.188
[INFO] [stderr]   Downloaded toml_datetime v0.6.3
[INFO] [stderr]   Downloaded trycmd v0.14.17
[INFO] [stderr]   Downloaded unicode-ident v1.0.11
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[INFO] [stderr]   Downloaded memchr v2.6.0
[INFO] [stderr]   Downloaded heck v0.4.1
[INFO] [stderr]   Downloaded serde v1.0.188
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[INFO] [stderr]   Downloaded anstyle-parse v0.2.1
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[INFO] [stderr]   Downloaded errno v0.3.2
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[INFO] [stderr]   Downloaded noodles-csi v0.22.0
[INFO] [stderr]   Downloaded bytes v1.4.0
[INFO] [stderr]   Downloaded sfs-core v0.1.0
[INFO] [stderr]   Downloaded windows_x86_64_gnullvm v0.48.5
[INFO] [stderr]   Downloaded clap_builder v4.4.0
[INFO] [stderr]   Downloaded rayon-core v1.11.0
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[INFO] [stderr]   Downloaded rustix v0.38.9
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[INFO] [stderr]   Downloaded humantime-serde v1.1.1
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[INFO] [stderr]   Downloaded log v0.4.20
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[INFO] [stderr]   Downloaded strsim v0.10.0
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[INFO] [stderr]   Downloaded windows-sys v0.48.0
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[INFO] [stderr]   Downloaded rayon v1.7.0
[INFO] [stderr]   Downloaded winnow v0.5.15
[INFO] [stderr]   Downloaded glob v0.3.1
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[INFO] [stderr]   Downloaded cc v1.0.83
[INFO] [stderr]   Downloaded toml_edit v0.19.14
[INFO] [stderr]   Downloaded hermit-abi v0.3.2
[INFO] [stderr]   Downloaded anstyle-query v1.0.0
[INFO] [stderr]   Downloaded colorchoice v1.0.0
[INFO] [stderr]   Downloaded windows-targets v0.48.5
[INFO] [stderr]   Downloaded adler v1.0.2
[INFO] [stderr]   Downloaded memoffset v0.9.0
[INFO] [stderr]   Downloaded anstream v0.5.0
[INFO] [stderr]   Downloaded byteorder v1.4.3
[INFO] [stderr]   Downloaded libc v0.2.147
[INFO] [stderr]   Downloaded same-file v1.0.6
[INFO] [stderr]   Downloaded redox_syscall v0.3.5
[INFO] [stderr]   Downloaded windows_aarch64_gnullvm v0.48.5
[INFO] [stderr]   Downloaded windows_i686_msvc v0.48.5
[INFO] [stderr]   Downloaded hashbrown v0.14.0
[INFO] [stderr]   Downloaded noodles-vcf v0.35.0
[INFO] [stderr]   Downloaded noodles-core v0.12.0
[INFO] [stderr]   Downloaded either v1.9.0
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.3
[INFO] [stderr]   Downloaded num_cpus v1.16.0
[INFO] [stderr]   Downloaded snapbox v0.4.12
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.15
[INFO] [stderr]   Downloaded proc-macro2 v1.0.66
[INFO] [stderr]   Downloaded once_cell v1.18.0
[INFO] [stderr]   Downloaded bit-vec v0.6.3
[INFO] [stderr]   Downloaded autocfg v1.1.0
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.16
[INFO] [stderr]   Downloaded walkdir v2.3.3
[INFO] [stderr]   Downloaded crc32fast v1.3.2
[INFO] [stderr]   Downloaded flate2 v1.0.27
[INFO] [stderr]   Downloaded clap v4.4.0
[INFO] [stderr]   Downloaded quote v1.0.33
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4194ab486c84cd0375bd118485544d868374d7637e3463fbd7605ae1cf3d3305
[INFO] running `Command { std: "docker" "start" "-a" "4194ab486c84cd0375bd118485544d868374d7637e3463fbd7605ae1cf3d3305", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4194ab486c84cd0375bd118485544d868374d7637e3463fbd7605ae1cf3d3305", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4194ab486c84cd0375bd118485544d868374d7637e3463fbd7605ae1cf3d3305", kill_on_drop: false }`
[INFO] [stdout] 4194ab486c84cd0375bd118485544d868374d7637e3463fbd7605ae1cf3d3305
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 321d9d338fad94a0cd8c286c8964102b0a440fd4fdd93ebba150f6a6d75a1560
[INFO] running `Command { std: "docker" "start" "-a" "321d9d338fad94a0cd8c286c8964102b0a440fd4fdd93ebba150f6a6d75a1560", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling hashbrown v0.14.0
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling equivalent v1.0.1
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling unicode-ident v1.0.11
[INFO] [stderr]    Compiling memchr v2.6.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling anstyle-parse v0.2.1
[INFO] [stderr]    Compiling anstyle-query v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.2
[INFO] [stderr]    Compiling percent-encoding v2.3.0
[INFO] [stderr]    Compiling flate2 v1.0.27
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling indexmap v2.0.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling anstream v0.5.0
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling clap_lex v0.5.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]    Compiling clap_builder v4.4.0
[INFO] [stderr]    Compiling syn v2.0.29
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling env_logger v0.10.0
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling clap_derive v4.4.0
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling clap v4.4.0
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.71s
[INFO] running `Command { std: "docker" "inspect" "321d9d338fad94a0cd8c286c8964102b0a440fd4fdd93ebba150f6a6d75a1560", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "321d9d338fad94a0cd8c286c8964102b0a440fd4fdd93ebba150f6a6d75a1560", kill_on_drop: false }`
[INFO] [stdout] 321d9d338fad94a0cd8c286c8964102b0a440fd4fdd93ebba150f6a6d75a1560
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 436ee70809f266ae696e86e258c3a69912084d5a3905207e0842a99706b978de
[INFO] running `Command { std: "docker" "start" "-a" "436ee70809f266ae696e86e258c3a69912084d5a3905207e0842a99706b978de", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling serde v1.0.188
[INFO] [stderr]    Compiling serde_derive v1.0.188
[INFO] [stderr]    Compiling rustix v0.38.9
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.5
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling fastrand v2.0.0
[INFO] [stderr]    Compiling snapbox-macros v0.3.5
[INFO] [stderr]    Compiling walkdir v2.3.3
[INFO] [stderr]    Compiling content_inspector v0.2.4
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]    Compiling winnow v0.5.15
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling either v1.9.0
[INFO] [stderr]    Compiling similar v2.2.1
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.3
[INFO] [stderr]    Compiling os_pipe v1.1.4
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling filetime v0.2.22
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling dunce v1.0.4
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling tempfile v3.8.0
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling snapbox v0.4.12
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling rayon v1.7.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling serde_spanned v0.6.3
[INFO] [stderr]    Compiling toml_datetime v0.6.3
[INFO] [stderr]    Compiling humantime-serde v1.1.1
[INFO] [stderr]    Compiling toml_edit v0.19.14
[INFO] [stderr]    Compiling trycmd v0.14.17
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 25.20s
[INFO] running `Command { std: "docker" "inspect" "436ee70809f266ae696e86e258c3a69912084d5a3905207e0842a99706b978de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "436ee70809f266ae696e86e258c3a69912084d5a3905207e0842a99706b978de", kill_on_drop: false }`
[INFO] [stdout] 436ee70809f266ae696e86e258c3a69912084d5a3905207e0842a99706b978de
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c370eeae8e8b29aa3b407afe687b992fae37b0433d60ae106f2a201aec9920eb
[INFO] running `Command { std: "docker" "start" "-a" "c370eeae8e8b29aa3b407afe687b992fae37b0433d60ae106f2a201aec9920eb", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sfs-582bfa32341546cf)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test create::tests::test_project_args_conflict ... ok
[INFO] [stdout] test create::tests::test_samples_and_samples_file_conflict ... ok
[INFO] [stdout] test create::tests::test_project ... ok
[INFO] [stdout] test create::tests::test_project_strict_conflict ... ok
[INFO] [stdout] test tests::test_no_subcommand ... ok
[INFO] [stdout] test view::tests::test_marginalize_keep_and_remove_conflict ... ok
[INFO] [stdout] test create::tests::test_parse_samples ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_tests.rs (/opt/rustwide/target/debug/deps/cli_tests-bf3251df1f58cc77)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stderr] Testing tests/stat/heterozygosity.toml ... ok
[INFO] [stderr] Testing tests/fold/fold_from_npy_inf.toml ... ok
[INFO] [stderr] Testing tests/stat/relatedness.toml ... ok
[INFO] [stderr] Testing tests/stat/precision.toml ... ok
[INFO] [stderr] Testing tests/fold/fold.toml ... ok
[INFO] [stdout] test fold ... ok
[INFO] [stderr] Testing tests/view/convert_to_npy.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_keep_unordered.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_remove.toml ... ok
[INFO] [stderr] Testing tests/create/empty.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_project.toml ... ok
[INFO] [stderr] Testing tests/create/missing_2d_project_subset.toml ... ok
[INFO] [stderr] Testing tests/stat/invalid_precision.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_from_npy.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/stat/f2_and_fst.toml ... ok
[INFO] [stderr] Testing tests/create/missing_3d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_invalid_project.toml ... ok
[INFO] [stderr] Testing tests/create/simple_1d_all.toml ... ok
[INFO] [stdout] test stat ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project_individuals.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_gz_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_1d_subset.toml ... ok
[INFO] [stdout] test view ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_all.toml ... ok
[INFO] [stderr] Testing tests/create/unknown.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_single.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_all.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_dimension_error_project.toml ... ok
[INFO] [stderr] Testing tests/create/large_4d_project_subset.toml ... ok
[INFO] [stdout] test create ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c370eeae8e8b29aa3b407afe687b992fae37b0433d60ae106f2a201aec9920eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c370eeae8e8b29aa3b407afe687b992fae37b0433d60ae106f2a201aec9920eb", kill_on_drop: false }`
[INFO] [stdout] c370eeae8e8b29aa3b407afe687b992fae37b0433d60ae106f2a201aec9920eb