[INFO] fetching crate seqtk-rs 0.2.0... [INFO] testing seqtk-rs-0.2.0 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate seqtk-rs 0.2.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate seqtk-rs 0.2.0 [INFO] finished tweaking crates.io crate seqtk-rs 0.2.0 [INFO] tweaked toml for crates.io crate seqtk-rs 0.2.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate seqtk-rs 0.2.0 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate seqtk-rs 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded easy-cast v0.5.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded average v0.16.0 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded diol v0.13.1 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded bio v2.3.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e282bb4b999e263eee3b77e074fb06c000f8df7b48b06f5f30367eda17b1bba2 [INFO] running `Command { std: "docker" "start" "-a" "e282bb4b999e263eee3b77e074fb06c000f8df7b48b06f5f30367eda17b1bba2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e282bb4b999e263eee3b77e074fb06c000f8df7b48b06f5f30367eda17b1bba2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e282bb4b999e263eee3b77e074fb06c000f8df7b48b06f5f30367eda17b1bba2", kill_on_drop: false }` [INFO] [stdout] e282bb4b999e263eee3b77e074fb06c000f8df7b48b06f5f30367eda17b1bba2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7862d0d44a473817711904e3790b727f4c8dc456cd262e3d35c9e3eb36fa3687 [INFO] running `Command { std: "docker" "start" "-a" "7862d0d44a473817711904e3790b727f4c8dc456cd262e3d35c9e3eb36fa3687", kill_on_drop: false }` [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling clap_builder v4.5.41 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling seqtk-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 48.33s [INFO] running `Command { std: "docker" "inspect" "7862d0d44a473817711904e3790b727f4c8dc456cd262e3d35c9e3eb36fa3687", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7862d0d44a473817711904e3790b727f4c8dc456cd262e3d35c9e3eb36fa3687", kill_on_drop: false }` [INFO] [stdout] 7862d0d44a473817711904e3790b727f4c8dc456cd262e3d35c9e3eb36fa3687 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4163060b7cd2556600a45312ce324ec5f9bff328aacb77c392e3ff9f0952f8ab [INFO] running `Command { std: "docker" "start" "-a" "4163060b7cd2556600a45312ce324ec5f9bff328aacb77c392e3ff9f0952f8ab", kill_on_drop: false }` [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling winnow v0.7.11 [INFO] [stderr] Compiling toml_write v0.1.2 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Compiling prettyplease v0.2.35 [INFO] [stderr] Compiling easy-cast v0.5.3 [INFO] [stderr] Compiling float-ord v0.3.2 [INFO] [stderr] Compiling indenter v0.3.3 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling average v0.16.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling equator-macro v0.2.1 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling equator v0.2.2 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling csscolorparser v0.6.2 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling colorgrad v0.6.2 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling toml_edit v0.22.27 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling toml v0.8.23 [INFO] [stderr] Compiling diol v0.13.1 [INFO] [stderr] Compiling seqtk-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 36.09s [INFO] running `Command { std: "docker" "inspect" "4163060b7cd2556600a45312ce324ec5f9bff328aacb77c392e3ff9f0952f8ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4163060b7cd2556600a45312ce324ec5f9bff328aacb77c392e3ff9f0952f8ab", kill_on_drop: false }` [INFO] [stdout] 4163060b7cd2556600a45312ce324ec5f9bff328aacb77c392e3ff9f0952f8ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4ca669945c3cb5f25f39861aad537decbb4a6f89970fde68305c1d1bb98152fb [INFO] running `Command { std: "docker" "start" "-a" "4ca669945c3cb5f25f39861aad537decbb4a6f89970fde68305c1d1bb98152fb", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/seqtk_rs-09232257b25d272b) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test bed::tests::test_is_overlapping ... ok [INFO] [stdout] test dna::tests::test_count_nucleotides ... ok [INFO] [stdout] test dna::tests::test_get_cp_index ... ok [INFO] [stdout] test seq::tests::test_add_newlines ... ok [INFO] [stdout] test seq::tests::test_is_filtered ... ok [INFO] [stdout] test seq::tests::test_modify_seq ... ok [INFO] [stdout] test seq::tests::test_modify_qual ... ok [INFO] [stdout] test seq::tests::test_revcomp ... ok [INFO] [stdout] test trim::tests::test_trim_read ... ok [INFO] [stdout] test stats::tests::test_qp_converter ... ok [INFO] [stdout] test bed::tests::test_merge_bed ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests seqtk_rs [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4ca669945c3cb5f25f39861aad537decbb4a6f89970fde68305c1d1bb98152fb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4ca669945c3cb5f25f39861aad537decbb4a6f89970fde68305c1d1bb98152fb", kill_on_drop: false }` [INFO] [stdout] 4ca669945c3cb5f25f39861aad537decbb4a6f89970fde68305c1d1bb98152fb