[INFO] fetching crate rumina 0.99.2... [INFO] testing rumina-0.99.2 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate rumina 0.99.2 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate rumina 0.99.2 [INFO] finished tweaking crates.io crate rumina 0.99.2 [INFO] tweaked toml for crates.io crate rumina 0.99.2 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rumina 0.99.2 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rumina 0.99.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded tikv-jemallocator v0.5.4 [INFO] [stderr] Downloaded jobserver v0.1.32 [INFO] [stderr] Downloaded redox_syscall v0.1.57 [INFO] [stderr] Downloaded thread-id v3.3.0 [INFO] [stderr] Downloaded log v0.4.25 [INFO] [stderr] Downloaded tikv-jemalloc-sys v0.5.4+5.3.0-patched [INFO] [stderr] Downloaded matrixmultiply v0.3.9 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded safe_arch v0.7.4 [INFO] [stderr] Downloaded getrandom v0.2.14 [INFO] [stderr] Downloaded bio-types v1.0.2 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded libz-sys v1.1.20 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded rust-htslib v0.47.0 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded nalgebra-macros v0.2.2 [INFO] [stderr] Downloaded simba v0.8.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded core_affinity v0.8.3 [INFO] [stderr] Downloaded libdeflater v1.24.0 [INFO] [stderr] Downloaded parking_lot v0.12.2 [INFO] [stderr] Downloaded ndarray v0.16.1 [INFO] [stderr] Downloaded bindgen v0.69.4 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded libloading v0.8.5 [INFO] [stderr] Downloaded cmake v0.1.51 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded thiserror-impl v1.0.63 [INFO] [stderr] Downloaded thiserror v1.0.63 [INFO] [stderr] Downloaded wide v0.7.32 [INFO] [stderr] Downloaded libdeflate-sys v1.24.0 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded libz-ng-sys v1.1.22 [INFO] [stderr] Downloaded cc v1.1.13 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded multimap v0.10.0 [INFO] [stderr] Downloaded anstyle-query v1.0.3 [INFO] [stderr] Downloaded terminal_size v0.3.0 [INFO] [stderr] Downloaded curl-sys v0.4.74+curl-8.9.0 [INFO] [stderr] Downloaded hts-sys v2.1.4 [INFO] [stderr] Downloaded openssl-src v300.3.1+3.3.1 [INFO] [stderr] Downloaded simple-logging v2.0.2 [INFO] [stderr] Downloaded gzp v1.0.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c98c3514aa998f10ad83bc5b8eb84d9ddf25f9877cf7e854101dd9e9ed495f8c [INFO] running `Command { std: "docker" "start" "-a" "c98c3514aa998f10ad83bc5b8eb84d9ddf25f9877cf7e854101dd9e9ed495f8c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c98c3514aa998f10ad83bc5b8eb84d9ddf25f9877cf7e854101dd9e9ed495f8c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c98c3514aa998f10ad83bc5b8eb84d9ddf25f9877cf7e854101dd9e9ed495f8c", kill_on_drop: false }` [INFO] [stdout] c98c3514aa998f10ad83bc5b8eb84d9ddf25f9877cf7e854101dd9e9ed495f8c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fbb558f967b0d01833a7e2cd5e57f158e193ce39673acd04ec513c7597404bfa [INFO] running `Command { std: "docker" "start" "-a" "fbb558f967b0d01833a7e2cd5e57f158e193ce39673acd04ec513c7597404bfa", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling litemap v0.8.0 [INFO] [stderr] Compiling writeable v0.6.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling tinyvec_macros v0.1.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling cc v1.1.13 [INFO] [stderr] Compiling scopeguard v1.2.0 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bitflags v2.5.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling tinyvec v1.8.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling cmake v0.1.51 [INFO] [stderr] Compiling openssl-src v300.3.1+3.3.1 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling anstyle-query v1.0.3 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling portable-atomic v1.9.0 [INFO] [stderr] Compiling openssl-sys v0.9.103 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.74+curl-8.9.0 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling libz-ng-sys v1.1.22 [INFO] [stderr] Compiling libdeflate-sys v1.24.0 [INFO] [stderr] Compiling tikv-jemalloc-sys v0.5.4+5.3.0-patched [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling miniz_oxide v0.8.8 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling terminal_size v0.3.0 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling futures-core v0.3.31 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling futures-sink v0.3.31 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling flume v0.11.1 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling core_affinity v0.8.3 [INFO] [stderr] Compiling url v2.5.2 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling libdeflater v1.24.0 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling crossbeam-queue v0.3.11 [INFO] [stderr] Compiling bytes v1.10.1 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling num-format v0.4.4 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling bio-types v1.0.2 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling simple-logging v2.0.2 [INFO] [stderr] Compiling parking_lot v0.12.2 [INFO] [stderr] Compiling colored v2.1.0 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling smol_str v0.3.2 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling gzp v1.0.1 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling tikv-jemallocator v0.5.4 [INFO] [stderr] Compiling rust-htslib v0.47.0 [INFO] [stderr] Compiling rumina v0.99.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: function `parse_args_extract` is never used [INFO] [stdout] --> src/args.rs:19:8 [INFO] [stdout] | [INFO] [stdout] 19 | pub fn parse_args_extract() -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `qname` is never used [INFO] [stdout] --> src/record.rs:56:8 [INFO] [stdout] | [INFO] [stdout] 49 | pub trait SequenceRecord { [INFO] [stdout] | -------------- method in this trait [INFO] [stdout] ... [INFO] [stdout] 56 | fn qname(&self) -> &[u8]; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 04s [INFO] running `Command { std: "docker" "inspect" "fbb558f967b0d01833a7e2cd5e57f158e193ce39673acd04ec513c7597404bfa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fbb558f967b0d01833a7e2cd5e57f158e193ce39673acd04ec513c7597404bfa", kill_on_drop: false }` [INFO] [stdout] fbb558f967b0d01833a7e2cd5e57f158e193ce39673acd04ec513c7597404bfa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 07efd1124033d8e78c0a1be6ce906a35246ef8c5346f2705e90457808478d875 [INFO] running `Command { std: "docker" "start" "-a" "07efd1124033d8e78c0a1be6ce906a35246ef8c5346f2705e90457808478d875", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling writeable v0.6.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling litemap v0.8.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling tinyvec v1.8.0 [INFO] [stderr] Compiling bitflags v2.5.0 [INFO] [stderr] Compiling cc v1.1.13 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling cmake v0.1.51 [INFO] [stderr] Compiling openssl-src v300.3.1+3.3.1 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] 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[INFO] [stdout] warning: function `parse_args_extract` is never used [INFO] [stdout] --> src/args.rs:19:8 [INFO] [stdout] | [INFO] [stdout] 19 | pub fn parse_args_extract() -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `qname` is never used [INFO] [stdout] --> src/record.rs:56:8 [INFO] [stdout] | [INFO] [stdout] 49 | pub trait SequenceRecord { [INFO] [stdout] | -------------- method in this trait [INFO] [stdout] ... [INFO] [stdout] 56 | fn qname(&self) -> &[u8]; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4m 02s [INFO] running `Command { std: "docker" "inspect" "07efd1124033d8e78c0a1be6ce906a35246ef8c5346f2705e90457808478d875", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "07efd1124033d8e78c0a1be6ce906a35246ef8c5346f2705e90457808478d875", kill_on_drop: false }` [INFO] [stdout] 07efd1124033d8e78c0a1be6ce906a35246ef8c5346f2705e90457808478d875 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 98f89aacf471fb4f46867cbb8799c41763b17329304dda0ee0e718e157838d83 [INFO] running `Command { std: "docker" "start" "-a" "98f89aacf471fb4f46867cbb8799c41763b17329304dda0ee0e718e157838d83", kill_on_drop: false }` [INFO] [stderr] warning: function `parse_args_extract` is never used [INFO] [stderr] --> src/args.rs:19:8 [INFO] [stderr] | [INFO] [stderr] 19 | pub fn parse_args_extract() -> Result { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: method `qname` is never used [INFO] [stderr] --> src/record.rs:56:8 [INFO] [stderr] | [INFO] [stderr] 49 | pub trait SequenceRecord { [INFO] [stderr] | -------------- method in this trait [INFO] [stderr] ... [INFO] [stderr] 56 | fn qname(&self) -> &[u8]; [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `rumina` (bin "rumina" test) generated 2 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.34s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rumina-fa2c225a98f19c05) [INFO] [stdout] [INFO] [stdout] running 14 tests [INFO] [stdout] test ngram::test_split2 ... ok [INFO] [stdout] test ngram::test_split4 ... ok [INFO] [stdout] test merge::tests::test_is_opp_orientation ... ok [INFO] [stdout] test read_picker::tests::test_get_counts ... ok [INFO] [stdout] test read_picker::tests::test_correct_errors_multiple_reads ... ok [INFO] [stdout] test ngram::test_split1 ... ok [INFO] [stdout] test record::test_rev1 ... ok [INFO] [stdout] test merge::tests::test_construct_sequence ... ok [INFO] [stdout] test merge::tests::test_is_overlap ... ok [INFO] [stdout] test bktree::tests::test_ngram_edge_case_2 ... ok [INFO] [stdout] test merge::tests::test_handle_dupes ... ok [INFO] [stdout] test bktree::tests::test_ngram_edge_case_1 ... ok [INFO] [stdout] test read_picker::tests::test_correct_errors_single_read ... ok [INFO] [stdout] test ngram::test_split3 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "98f89aacf471fb4f46867cbb8799c41763b17329304dda0ee0e718e157838d83", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "98f89aacf471fb4f46867cbb8799c41763b17329304dda0ee0e718e157838d83", kill_on_drop: false }` [INFO] [stdout] 98f89aacf471fb4f46867cbb8799c41763b17329304dda0ee0e718e157838d83