[INFO] fetching crate parasail-rs 0.8.1... [INFO] testing parasail-rs-0.8.1 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate parasail-rs 0.8.1 into /workspace/builds/worker-2-tc1/source [INFO] removed /workspace/builds/worker-2-tc1/source/rust-toolchain.toml [INFO] started tweaking crates.io crate parasail-rs 0.8.1 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate parasail-rs 0.8.1 [INFO] tweaked toml for crates.io crate parasail-rs 0.8.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate parasail-rs 0.8.1 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate parasail-rs 0.8.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libparasail-sys v0.1.12 [INFO] [stderr] Downloaded rustix v0.38.41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3c5047cee60c62e0e15cf132d45a1bbfa5937deba4ac97bdb635f215a4e7d118 [INFO] running `Command { std: "docker" "start" "-a" "3c5047cee60c62e0e15cf132d45a1bbfa5937deba4ac97bdb635f215a4e7d118", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3c5047cee60c62e0e15cf132d45a1bbfa5937deba4ac97bdb635f215a4e7d118", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3c5047cee60c62e0e15cf132d45a1bbfa5937deba4ac97bdb635f215a4e7d118", kill_on_drop: false }` [INFO] [stdout] 3c5047cee60c62e0e15cf132d45a1bbfa5937deba4ac97bdb635f215a4e7d118 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9d34240bdc73333cd6a2ae03bbd4dd94c2035105984f1b72e5e82c401ad12e94 [INFO] running `Command { std: "docker" "start" "-a" "9d34240bdc73333cd6a2ae03bbd4dd94c2035105984f1b72e5e82c401ad12e94", kill_on_drop: false }` [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling rustix v0.38.41 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling prettyplease v0.2.25 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling cc v1.2.31 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive_more-impl v2.0.1 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling derive_more v2.0.1 [INFO] [stderr] Compiling libparasail-sys v0.1.12 [INFO] [stderr] Compiling parasail-rs v0.8.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 59s [INFO] running `Command { std: "docker" "inspect" "9d34240bdc73333cd6a2ae03bbd4dd94c2035105984f1b72e5e82c401ad12e94", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9d34240bdc73333cd6a2ae03bbd4dd94c2035105984f1b72e5e82c401ad12e94", kill_on_drop: false }` [INFO] [stdout] 9d34240bdc73333cd6a2ae03bbd4dd94c2035105984f1b72e5e82c401ad12e94 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c4d009237b24d65dbd30bf1ce61fa90adf2acfd7dc31de7482958efcb5d46f46 [INFO] running `Command { std: "docker" "start" "-a" "c4d009237b24d65dbd30bf1ce61fa90adf2acfd7dc31de7482958efcb5d46f46", kill_on_drop: false }` [INFO] [stderr] Compiling parasail-rs v0.8.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.92s [INFO] running `Command { std: "docker" "inspect" "c4d009237b24d65dbd30bf1ce61fa90adf2acfd7dc31de7482958efcb5d46f46", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c4d009237b24d65dbd30bf1ce61fa90adf2acfd7dc31de7482958efcb5d46f46", kill_on_drop: false }` [INFO] [stdout] c4d009237b24d65dbd30bf1ce61fa90adf2acfd7dc31de7482958efcb5d46f46 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 47b5949d8724b6ad86465bf41634281086b82dc7bf5f005dcf4863b0b711ff21 [INFO] running `Command { std: "docker" "start" "-a" "47b5949d8724b6ad86465bf41634281086b82dc7bf5f005dcf4863b0b711ff21", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/parasail_rs-80cf78be96140830) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stderr] Running tests/test_parasail.rs (/opt/rustwide/target/debug/deps/test_parasail-c4ae2ad8312c0a0c) [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 36 tests [INFO] [stdout] test get_cigar ... ok [INFO] [stdout] test get_traceback_strings ... ok [INFO] [stdout] test global_16bit ... ok [INFO] [stdout] test aligner_construction ... ok [INFO] [stdout] test global_32bit ... ok [INFO] [stdout] test global_alignment ... ok [INFO] [stdout] test global_64bit ... ok [INFO] [stdout] test global_with_stats ... ok [INFO] [stdout] test global_with_profile ... ok [INFO] [stdout] test length_row ... ok [INFO] [stdout] test length_table ... ok [INFO] [stdout] test local_alignment ... ok [INFO] [stdout] test global_8bit ... ok [INFO] [stdout] test local_with_profile ... ok [INFO] [stdout] test local_with_stats ... ok [INFO] [stdout] test match_col ... ok [INFO] [stdout] test matches_row ... ok [INFO] [stdout] test print_traceback ... ok [INFO] [stdout] test semi_global_with_profile ... ok [INFO] [stdout] test similar_col ... ok [INFO] [stdout] test similar_table ... ok [INFO] [stdout] test similar_row ... ok [INFO] [stdout] test test_ssw_alignment ... ok [INFO] [stdout] test matches_table ... ok [INFO] [stdout] test score_row ... ok [INFO] [stdout] test semi_global_alignment ... ok [INFO] [stdout] test profile_construction ... ok [INFO] [stdout] test test_ssw_init ... ok [INFO] [stdout] test trace_table ... ok [INFO] [stdout] test multithread_global_alignment ... ok [INFO] [stderr] Doc-tests parasail_rs [INFO] [stdout] test semi_global_with_stats ... ok [INFO] [stdout] test test_banded_nw ... ok [INFO] [stdout] test length_col ... ok [INFO] [stdout] test score_table ... ok [INFO] [stdout] test score_col ... ok [INFO] [stdout] test matrix_construction ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 36 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Target: 1 ACGT 4 [INFO] [stdout] |||| [INFO] [stdout] Query: 1 ACGT 4 [INFO] [stdout] [INFO] [stdout] Length: 4 [INFO] [stdout] Identity: 4/4 (100.0%) [INFO] [stdout] Similarity: 4/4 (100.0%) [INFO] [stdout] Gaps: 0/4 ( 0.0%) [INFO] [stdout] Score: 4 [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/aligner/mod.rs - aligner::AlignerBuilder::allow_ref_gaps (line 169) - compile ... ok [INFO] [stdout] test src/lib.rs - (line 35) - compile ... ok [INFO] [stdout] test src/aligner/mod.rs - aligner::AlignerBuilder::allow_query_gaps (line 154) - compile ... ok [INFO] [stdout] test src/lib.rs - (line 15) - compile ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "47b5949d8724b6ad86465bf41634281086b82dc7bf5f005dcf4863b0b711ff21", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47b5949d8724b6ad86465bf41634281086b82dc7bf5f005dcf4863b0b711ff21", kill_on_drop: false }` [INFO] [stdout] 47b5949d8724b6ad86465bf41634281086b82dc7bf5f005dcf4863b0b711ff21