[INFO] fetching crate omics-variation 0.2.0... [INFO] testing omics-variation-0.2.0 against master#caccb4d0368bd918ef6668af8e13834d07040417 for pr-146098-1 [INFO] extracting crate omics-variation 0.2.0 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate omics-variation 0.2.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate omics-variation 0.2.0 [INFO] tweaked toml for crates.io crate omics-variation 0.2.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate omics-variation 0.2.0 on toolchain caccb4d0368bd918ef6668af8e13834d07040417 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate omics-variation 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded omics-core v0.1.0 [INFO] [stderr] Downloaded syn v2.0.93 [INFO] [stderr] Downloaded thiserror v2.0.9 [INFO] [stderr] Downloaded anyhow v1.0.94 [INFO] [stderr] Downloaded omics-molecule v0.1.0 [INFO] [stderr] Downloaded thiserror-impl v2.0.9 [INFO] [stderr] Downloaded omics-coordinate v0.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8f463d396d196a86e375a49f9f1c8979e3f61ada234d7ca4cbe0fc13e61033e7 [INFO] running `Command { std: "docker" "start" "-a" "8f463d396d196a86e375a49f9f1c8979e3f61ada234d7ca4cbe0fc13e61033e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8f463d396d196a86e375a49f9f1c8979e3f61ada234d7ca4cbe0fc13e61033e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8f463d396d196a86e375a49f9f1c8979e3f61ada234d7ca4cbe0fc13e61033e7", kill_on_drop: false }` [INFO] [stdout] 8f463d396d196a86e375a49f9f1c8979e3f61ada234d7ca4cbe0fc13e61033e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 95a9fcd2b2341d50ee32e79a214cce900ded4b5afbc1a7d63361788cebd8fe10 [INFO] running `Command { std: "docker" "start" "-a" "95a9fcd2b2341d50ee32e79a214cce900ded4b5afbc1a7d63361788cebd8fe10", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling thiserror v2.0.9 [INFO] [stderr] Compiling omics-core v0.1.0 [INFO] [stderr] Compiling omics-molecule v0.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling syn v2.0.93 [INFO] [stderr] Compiling thiserror-impl v2.0.9 [INFO] [stderr] Compiling omics-coordinate v0.2.0 [INFO] [stderr] Compiling omics-variation v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.89s [INFO] running `Command { std: "docker" "inspect" "95a9fcd2b2341d50ee32e79a214cce900ded4b5afbc1a7d63361788cebd8fe10", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "95a9fcd2b2341d50ee32e79a214cce900ded4b5afbc1a7d63361788cebd8fe10", kill_on_drop: false }` [INFO] [stdout] 95a9fcd2b2341d50ee32e79a214cce900ded4b5afbc1a7d63361788cebd8fe10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e1b03e0f93b326b74311c446924a4cca4016e208e190d2ab50c4fc6540d1b730 [INFO] running `Command { std: "docker" "start" "-a" "e1b03e0f93b326b74311c446924a4cca4016e208e190d2ab50c4fc6540d1b730", kill_on_drop: false }` [INFO] [stderr] Compiling anyhow v1.0.94 [INFO] [stderr] Compiling omics-variation v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.29s [INFO] running `Command { std: "docker" "inspect" "e1b03e0f93b326b74311c446924a4cca4016e208e190d2ab50c4fc6540d1b730", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1b03e0f93b326b74311c446924a4cca4016e208e190d2ab50c4fc6540d1b730", kill_on_drop: false }` [INFO] [stdout] e1b03e0f93b326b74311c446924a4cca4016e208e190d2ab50c4fc6540d1b730 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+caccb4d0368bd918ef6668af8e13834d07040417" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 53c6e726baa458c01e361841b16e5d3f3191f37cd617ac6d7f87284adbd74792 [INFO] running `Command { std: "docker" "start" "-a" "53c6e726baa458c01e361841b16e5d3f3191f37cd617ac6d7f87284adbd74792", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_variation-7a393c8533b2b568) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test snv::tests::it_creates_a_variant_in_a_dna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_on_the_negative_strand_in_a_dna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_with_no_specified_strand_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_with_no_specified_strand_in_a_dna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_on_the_negative_strand_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_a_deletion ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_fails_when_creating_a_variant_with_identical_nucleotides ... ok [INFO] [stdout] test tests::it_parses_dna_snvs_correctly ... ok [INFO] [stdout] test tests::it_serializes_correctly ... ok [INFO] [stdout] test tests::it_errors_when_attempting_to_parse_invalid_variants ... ok [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_an_empty_pair ... ok [INFO] [stderr] Doc-tests omics_variation [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_an_insertion ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/snv.rs - snv::Variant::alternate (line 198) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::try_new (line 109) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::reference (line 176) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::coordinate (line 149) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.79s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "53c6e726baa458c01e361841b16e5d3f3191f37cd617ac6d7f87284adbd74792", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "53c6e726baa458c01e361841b16e5d3f3191f37cd617ac6d7f87284adbd74792", kill_on_drop: false }` [INFO] [stdout] 53c6e726baa458c01e361841b16e5d3f3191f37cd617ac6d7f87284adbd74792