[INFO] cloning repository https://github.com/lorewar2/bio_exp [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lorewar2/bio_exp" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 48bbb4f81b7c08244bcde288ad821f45a4cd1287 [INFO] checking lorewar2/bio_exp against try#804fff1ae95da9d03bd44eee27f258020a575dab for pr-146013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 804fff1ae95da9d03bd44eee27f258020a575dab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking lorewar2/bio_exp against try#804fff1ae95da9d03bd44eee27f258020a575dab for pr-146013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 804fff1ae95da9d03bd44eee27f258020a575dab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 180 packages to latest compatible versions [INFO] [stderr] Adding aho-corasick v1.1.3 [INFO] [stderr] Adding allocator-api2 v0.2.21 [INFO] [stderr] Adding anyhow v1.0.99 [INFO] [stderr] Adding approx v0.5.1 [INFO] [stderr] Adding autocfg v1.5.0 [INFO] [stderr] Adding bindgen v0.69.5 [INFO] [stderr] Adding bio v2.3.0 [INFO] [stderr] Adding bio-types v1.0.4 [INFO] [stderr] Adding bit-set v0.8.0 [INFO] [stderr] Adding bit-vec v0.8.0 [INFO] [stderr] Adding bitflags v2.9.4 [INFO] [stderr] Adding bv v0.11.1 [INFO] [stderr] Adding bytecount v0.6.9 [INFO] [stderr] Adding bytemuck v1.23.2 [INFO] [stderr] Adding byteorder v1.5.0 [INFO] [stderr] Adding bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Adding cc v1.2.36 [INFO] [stderr] Adding cexpr v0.6.0 [INFO] [stderr] Adding cfg-if v1.0.3 [INFO] [stderr] Adding clang-sys v1.8.1 [INFO] [stderr] Adding cmake v0.1.54 [INFO] [stderr] Adding csv v1.3.1 [INFO] [stderr] Adding csv-core v0.1.12 [INFO] [stderr] Adding curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derive-new v0.6.0 [INFO] [stderr] Adding derive-new v0.7.0 [INFO] [stderr] Adding displaydoc v0.2.5 [INFO] [stderr] Adding editdistancek v1.0.2 [INFO] [stderr] Adding either v1.15.0 [INFO] [stderr] Adding enum-map v2.7.3 [INFO] [stderr] Adding enum-map-derive v0.17.0 [INFO] [stderr] Adding equivalent v1.0.2 [INFO] [stderr] Adding feature-probe v0.1.1 [INFO] [stderr] Adding find-msvc-tools v0.1.1 [INFO] [stderr] Adding fixedbitset v0.4.2 [INFO] [stderr] Adding fixedbitset v0.5.7 [INFO] [stderr] Adding foldhash v0.1.5 [INFO] [stderr] Adding form_urlencoded v1.2.2 [INFO] [stderr] Adding fs-utils v1.1.4 [INFO] [stderr] Adding fxhash v0.2.1 [INFO] [stderr] Adding getrandom v0.2.16 [INFO] [stderr] Adding getrandom v0.3.3 [INFO] [stderr] Adding glob v0.3.3 [INFO] [stderr] Adding hashbrown v0.15.5 [INFO] [stderr] Adding heck v0.5.0 [INFO] [stderr] Adding hts-sys v2.2.0 [INFO] [stderr] Adding icu_collections v2.0.0 [INFO] [stderr] Adding icu_locale_core v2.0.0 [INFO] [stderr] Adding icu_normalizer v2.0.0 [INFO] [stderr] Adding icu_normalizer_data v2.0.0 [INFO] [stderr] Adding icu_properties v2.0.1 [INFO] [stderr] Adding icu_properties_data v2.0.1 [INFO] [stderr] Adding icu_provider v2.0.0 [INFO] [stderr] Adding idna v1.1.0 [INFO] [stderr] Adding idna_adapter v1.2.1 [INFO] [stderr] Adding ieee754 v0.2.6 [INFO] [stderr] Adding indexmap v2.11.0 [INFO] [stderr] Adding itertools v0.12.1 [INFO] [stderr] Adding itertools v0.14.0 [INFO] [stderr] Adding itertools-num v0.1.3 [INFO] [stderr] Adding itoa v1.0.15 [INFO] [stderr] Adding jobserver v0.1.34 [INFO] [stderr] Adding lazy_static v1.5.0 [INFO] [stderr] Adding lazycell v1.3.0 [INFO] [stderr] Adding libc v0.2.175 [INFO] [stderr] Adding libloading v0.8.8 [INFO] [stderr] Adding libm v0.1.4 (available: v0.2.15) [INFO] [stderr] Adding libm v0.2.15 [INFO] [stderr] Adding libz-sys v1.1.22 [INFO] [stderr] Adding linear-map v1.2.0 [INFO] [stderr] Adding litemap v0.8.0 [INFO] [stderr] Adding logaddexp v0.1.3 [INFO] [stderr] Adding lzma-sys v0.1.20 [INFO] [stderr] Adding matrixmultiply v0.3.10 [INFO] [stderr] Adding memchr v2.7.5 [INFO] [stderr] Adding minimal-lexical v0.2.1 [INFO] [stderr] Adding multimap v0.10.1 [INFO] [stderr] Adding nalgebra v0.29.0 [INFO] [stderr] Adding nalgebra v0.33.2 [INFO] [stderr] Adding nalgebra-macros v0.1.0 [INFO] [stderr] Adding ndarray v0.16.1 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding nom v7.1.3 [INFO] [stderr] Adding num-bigint v0.4.6 [INFO] [stderr] Adding num-complex v0.4.6 [INFO] [stderr] Adding num-integer v0.1.46 [INFO] [stderr] Adding num-rational v0.4.2 [INFO] [stderr] Adding num-traits v0.2.19 [INFO] [stderr] Adding openssl-src v300.5.2+3.5.2 [INFO] [stderr] Adding openssl-sys v0.9.109 [INFO] [stderr] Adding ordered-float v5.0.0 [INFO] [stderr] Adding paste v1.0.15 [INFO] [stderr] Adding percent-encoding v2.3.2 [INFO] [stderr] Adding petgraph v0.6.5 (available: v0.8.2) [INFO] [stderr] Adding petgraph v0.8.2 [INFO] [stderr] Adding pkg-config v0.3.32 [INFO] [stderr] Adding portable-atomic v1.11.1 [INFO] [stderr] Adding portable-atomic-util v0.2.4 [INFO] [stderr] Adding potential_utf v0.1.3 [INFO] [stderr] Adding ppv-lite86 v0.2.21 [INFO] [stderr] Adding proc-macro2 v1.0.101 [INFO] [stderr] Adding quick-error v1.2.3 [INFO] [stderr] Adding quote v1.0.40 [INFO] [stderr] Adding r-efi v5.3.0 [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.2) [INFO] [stderr] Adding rand_chacha v0.3.1 [INFO] [stderr] Adding rand_core v0.6.4 [INFO] [stderr] Adding rand_distr v0.4.3 [INFO] [stderr] Adding rawpointer v0.2.1 [INFO] [stderr] Adding regex v1.11.2 [INFO] [stderr] Adding regex-automata v0.4.10 [INFO] [stderr] Adding regex-syntax v0.8.6 [INFO] [stderr] Adding rust-htslib v0.50.0 [INFO] [stderr] Adding rustc-hash v1.1.0 [INFO] [stderr] Adding rustc_version v0.1.7 [INFO] [stderr] Adding rustversion v1.0.22 [INFO] [stderr] Adding ryu v1.0.20 [INFO] [stderr] Adding safe_arch v0.7.4 [INFO] [stderr] Adding semver v0.1.20 [INFO] [stderr] Adding serde v1.0.219 [INFO] [stderr] Adding serde_derive v1.0.219 [INFO] [stderr] Adding shlex v1.3.0 [INFO] [stderr] Adding simba v0.6.0 [INFO] [stderr] Adding simba v0.9.1 [INFO] [stderr] Adding smallvec v1.15.1 [INFO] [stderr] Adding stable_deref_trait v1.2.0 [INFO] [stderr] Adding statrs v0.16.1 (available: v0.18.0) [INFO] [stderr] Adding statrs v0.18.0 [INFO] [stderr] Adding strum v0.26.3 [INFO] [stderr] Adding strum_macros v0.26.4 [INFO] [stderr] Adding syn v1.0.109 [INFO] [stderr] Adding syn v2.0.106 [INFO] [stderr] Adding synstructure v0.13.2 [INFO] [stderr] Adding thiserror v1.0.69 [INFO] [stderr] Adding thiserror v2.0.16 [INFO] [stderr] Adding thiserror-impl v1.0.69 [INFO] [stderr] Adding thiserror-impl v2.0.16 [INFO] [stderr] Adding tinystr v0.8.1 [INFO] [stderr] Adding triple_accel v0.4.0 [INFO] [stderr] Adding typenum v1.18.0 [INFO] [stderr] Adding unicode-ident v1.0.18 [INFO] [stderr] Adding url v2.5.7 [INFO] [stderr] Adding utf8_iter v1.0.4 [INFO] [stderr] Adding vcpkg v0.2.15 [INFO] [stderr] Adding vec_map v0.8.2 [INFO] [stderr] Adding wasi v0.11.1+wasi-snapshot-preview1 [INFO] [stderr] Adding wasi v0.14.4+wasi-0.2.4 [INFO] [stderr] Adding wide v0.7.33 [INFO] [stderr] Adding windows-link v0.1.3 [INFO] [stderr] Adding windows-sys v0.59.0 [INFO] [stderr] Adding windows-targets v0.52.6 [INFO] [stderr] Adding windows-targets v0.53.3 [INFO] [stderr] Adding windows_aarch64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_aarch64_gnullvm v0.53.0 [INFO] [stderr] Adding windows_aarch64_msvc v0.52.6 [INFO] [stderr] Adding windows_aarch64_msvc v0.53.0 [INFO] [stderr] Adding windows_i686_gnu v0.52.6 [INFO] [stderr] Adding windows_i686_gnu v0.53.0 [INFO] [stderr] Adding windows_i686_gnullvm v0.52.6 [INFO] [stderr] Adding windows_i686_gnullvm v0.53.0 [INFO] [stderr] Adding windows_i686_msvc v0.52.6 [INFO] [stderr] Adding windows_i686_msvc v0.53.0 [INFO] [stderr] Adding windows_x86_64_gnu v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnu v0.53.0 [INFO] [stderr] Adding windows_x86_64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnullvm v0.53.0 [INFO] [stderr] Adding windows_x86_64_msvc v0.52.6 [INFO] [stderr] Adding windows_x86_64_msvc v0.53.0 [INFO] [stderr] Adding wit-bindgen v0.45.1 [INFO] [stderr] Adding writeable v0.6.1 [INFO] [stderr] Adding yoke v0.8.0 [INFO] [stderr] Adding yoke-derive v0.8.0 [INFO] [stderr] Adding zerocopy v0.8.26 [INFO] [stderr] Adding zerocopy-derive v0.8.26 [INFO] [stderr] Adding zerofrom v0.1.6 [INFO] [stderr] Adding zerofrom-derive v0.1.6 [INFO] [stderr] Adding zerotrie v0.2.2 [INFO] [stderr] Adding zerovec v0.11.4 [INFO] [stderr] Adding zerovec-derive v0.11.1 [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking lorewar2/bio_exp against try#804fff1ae95da9d03bd44eee27f258020a575dab for pr-146013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 804fff1ae95da9d03bd44eee27f258020a575dab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking lorewar2/bio_exp against try#804fff1ae95da9d03bd44eee27f258020a575dab for pr-146013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 804fff1ae95da9d03bd44eee27f258020a575dab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking lorewar2/bio_exp against try#804fff1ae95da9d03bd44eee27f258020a575dab for pr-146013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 804fff1ae95da9d03bd44eee27f258020a575dab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+804fff1ae95da9d03bd44eee27f258020a575dab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds no output for 300 seconds