[INFO] cloning repository https://github.com/noahcape/seqproc-spotcheck
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/noahcape/seqproc-spotcheck" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 24a50d12d20216bb3157dddc4280f1a3b60016ec
[INFO] checking noahcape/seqproc-spotcheck against master#fe55364329579d361b1ab565728bc033a7dba07e for pr-146013
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] finished tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] tweaked toml for git repo https://github.com/noahcape/seqproc-spotcheck written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/noahcape/seqproc-spotcheck on toolchain fe55364329579d361b1ab565728bc033a7dba07e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fe55364329579d361b1ab565728bc033a7dba07e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/noahcape/seqproc-spotcheck already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fe55364329579d361b1ab565728bc033a7dba07e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded read-structure v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+fe55364329579d361b1ab565728bc033a7dba07e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 948c445399a8d953f65674fc8e27ea345bd4b6a004b25914e26ca1f0351a1a80
[INFO] running `Command { std: "docker" "start" "-a" "948c445399a8d953f65674fc8e27ea345bd4b6a004b25914e26ca1f0351a1a80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "948c445399a8d953f65674fc8e27ea345bd4b6a004b25914e26ca1f0351a1a80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "948c445399a8d953f65674fc8e27ea345bd4b6a004b25914e26ca1f0351a1a80", kill_on_drop: false }`
[INFO] [stdout] 948c445399a8d953f65674fc8e27ea345bd4b6a004b25914e26ca1f0351a1a80
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+fe55364329579d361b1ab565728bc033a7dba07e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 655fe4a379d2f5090b82752727a0ee2fac59a093fab5884d6ad734b43eea9db9
[INFO] running `Command { std: "docker" "start" "-a" "655fe4a379d2f5090b82752727a0ee2fac59a093fab5884d6ad734b43eea9db9", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.207
[INFO] [stderr]     Checking bytemuck v1.16.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking clap_builder v4.5.14
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.207
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking thiserror v1.0.63
[INFO] [stderr]     Checking read-structure v0.2.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking clap v4.5.14
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking seqproc_paper_benchmarking v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `write_fastqs` is never used
[INFO] [stdout]    --> src/main.rs:505:8
[INFO] [stdout]     |
[INFO] [stdout] 505 |     fn write_fastqs(outf: &mut File, records: Vec<Record>) -> Result<(), Error> {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 38.93s
[INFO] running `Command { std: "docker" "inspect" "655fe4a379d2f5090b82752727a0ee2fac59a093fab5884d6ad734b43eea9db9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "655fe4a379d2f5090b82752727a0ee2fac59a093fab5884d6ad734b43eea9db9", kill_on_drop: false }`
[INFO] [stdout] 655fe4a379d2f5090b82752727a0ee2fac59a093fab5884d6ad734b43eea9db9