[INFO] fetching crate thaf 0.0.3... [INFO] testing thaf-0.0.3 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate thaf 0.0.3 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate thaf 0.0.3 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate thaf 0.0.3 [INFO] tweaked toml for crates.io crate thaf 0.0.3 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate thaf 0.0.3 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate thaf 0.0.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ca2a11f168fcec8affe518299c4e026abd6b03f70bd86911b050b05031bc3d41 [INFO] running `Command { std: "docker" "start" "-a" "ca2a11f168fcec8affe518299c4e026abd6b03f70bd86911b050b05031bc3d41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ca2a11f168fcec8affe518299c4e026abd6b03f70bd86911b050b05031bc3d41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ca2a11f168fcec8affe518299c4e026abd6b03f70bd86911b050b05031bc3d41", kill_on_drop: false }` [INFO] [stdout] ca2a11f168fcec8affe518299c4e026abd6b03f70bd86911b050b05031bc3d41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bf42eb559682684fe870266bc97bdd800b6060f0d7dc703b41edff384d900c09 [INFO] running `Command { std: "docker" "start" "-a" "bf42eb559682684fe870266bc97bdd800b6060f0d7dc703b41edff384d900c09", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling clap_builder v4.5.41 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling thaf v0.0.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 33.65s [INFO] running `Command { std: "docker" "inspect" "bf42eb559682684fe870266bc97bdd800b6060f0d7dc703b41edff384d900c09", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf42eb559682684fe870266bc97bdd800b6060f0d7dc703b41edff384d900c09", kill_on_drop: false }` [INFO] [stdout] bf42eb559682684fe870266bc97bdd800b6060f0d7dc703b41edff384d900c09 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 24b93a77654cd4da728d2527051c4e96602a60fde4376f398dae95ce06ead83d [INFO] running `Command { std: "docker" "start" "-a" "24b93a77654cd4da728d2527051c4e96602a60fde4376f398dae95ce06ead83d", kill_on_drop: false }` [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling rustix v1.0.7 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling thaf v0.0.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.29s [INFO] running `Command { std: "docker" "inspect" "24b93a77654cd4da728d2527051c4e96602a60fde4376f398dae95ce06ead83d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24b93a77654cd4da728d2527051c4e96602a60fde4376f398dae95ce06ead83d", kill_on_drop: false }` [INFO] [stdout] 24b93a77654cd4da728d2527051c4e96602a60fde4376f398dae95ce06ead83d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4d92e5612dac3bd3b90f4a3fe14a975266ef28dc4b85bc2146105744709e8d88 [INFO] running `Command { std: "docker" "start" "-a" "4d92e5612dac3bd3b90f4a3fe14a975266ef28dc4b85bc2146105744709e8d88", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/thaf-4c38b15af0b61b56) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok [INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok [INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/thaf-2d2146211aa94754) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok [INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok [INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok [INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s [INFO] [stdout] [INFO] [stderr] Running tests/minitest.rs (/opt/rustwide/target/debug/deps/minitest-3131c3e34623ede0) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test minimal_transcript_extraction ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests thaf [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4d92e5612dac3bd3b90f4a3fe14a975266ef28dc4b85bc2146105744709e8d88", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d92e5612dac3bd3b90f4a3fe14a975266ef28dc4b85bc2146105744709e8d88", kill_on_drop: false }` [INFO] [stdout] 4d92e5612dac3bd3b90f4a3fe14a975266ef28dc4b85bc2146105744709e8d88