[INFO] fetching crate seqsizzle 0.3.0... [INFO] testing seqsizzle-0.3.0 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate seqsizzle 0.3.0 into /workspace/builds/worker-0-tc2/source [INFO] started tweaking crates.io crate seqsizzle 0.3.0 [INFO] finished tweaking crates.io crate seqsizzle 0.3.0 [INFO] tweaked toml for crates.io crate seqsizzle 0.3.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate seqsizzle 0.3.0 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate seqsizzle 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 91c94a91d401c1d55fa1fbe277bd5d057ce3e92c585a6ebd38b44d83243486cd [INFO] running `Command { std: "docker" "start" "-a" "91c94a91d401c1d55fa1fbe277bd5d057ce3e92c585a6ebd38b44d83243486cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "91c94a91d401c1d55fa1fbe277bd5d057ce3e92c585a6ebd38b44d83243486cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "91c94a91d401c1d55fa1fbe277bd5d057ce3e92c585a6ebd38b44d83243486cd", kill_on_drop: false }` [INFO] [stdout] 91c94a91d401c1d55fa1fbe277bd5d057ce3e92c585a6ebd38b44d83243486cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] daca74206bc59516c061dc6d93960da4bc63ad9288c9865fc082da2a64a212a0 [INFO] running `Command { std: "docker" "start" "-a" "daca74206bc59516c061dc6d93960da4bc63ad9288c9865fc082da2a64a212a0", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling libgit2-sys v0.18.2+1.9.1 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Compiling tz-rs v0.7.0 [INFO] [stderr] Compiling const_format_proc_macros v0.2.34 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling time v0.3.41 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling tzdb_data v0.2.2 [INFO] [stderr] Compiling const_format v0.2.34 [INFO] [stderr] Compiling mio v1.0.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling instability v0.3.9 [INFO] [stderr] Compiling bitflags v2.9.3 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling is_debug v1.1.0 [INFO] [stderr] Compiling signal-hook-mio v0.2.4 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling tzdb v0.7.2 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling unicode-truncate v1.1.0 [INFO] [stderr] Compiling anstream v0.6.20 [INFO] [stderr] Compiling compact_str v0.8.1 [INFO] [stderr] Compiling crossterm v0.28.1 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling lru v0.12.5 [INFO] [stderr] Compiling indexmap v2.11.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling cassowary v0.3.0 [INFO] [stderr] Compiling trilean v1.1.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling gcollections v1.5.0 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling clap_builder v4.5.46 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling ratatui v0.29.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling uuid-macro-internal v1.18.0 [INFO] [stderr] Compiling clap_derive v4.5.45 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling tui-textarea v0.7.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling clap v4.5.46 [INFO] [stderr] Compiling intervallum v1.4.4 [INFO] [stderr] Compiling uuid v1.18.0 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling git2 v0.20.2 [INFO] [stderr] Compiling shadow-rs v1.3.0 [INFO] [stderr] Compiling seqsizzle v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 12s [INFO] running `Command { std: "docker" "inspect" "daca74206bc59516c061dc6d93960da4bc63ad9288c9865fc082da2a64a212a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "daca74206bc59516c061dc6d93960da4bc63ad9288c9865fc082da2a64a212a0", kill_on_drop: false }` [INFO] [stdout] daca74206bc59516c061dc6d93960da4bc63ad9288c9865fc082da2a64a212a0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 539c2c30938af0a1949f0394c47389450a9dc9ec0ae8f21f14a7f4a64203c810 [INFO] running `Command { std: "docker" "start" "-a" "539c2c30938af0a1949f0394c47389450a9dc9ec0ae8f21f14a7f4a64203c810", kill_on_drop: false }` [INFO] [stderr] Compiling seqsizzle v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.92s [INFO] running `Command { std: "docker" "inspect" "539c2c30938af0a1949f0394c47389450a9dc9ec0ae8f21f14a7f4a64203c810", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "539c2c30938af0a1949f0394c47389450a9dc9ec0ae8f21f14a7f4a64203c810", kill_on_drop: false }` [INFO] [stdout] 539c2c30938af0a1949f0394c47389450a9dc9ec0ae8f21f14a7f4a64203c810 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5493334629f76cb4be0cb1dd5a4c4fa109bf25019b3fd5c279a8d881d6f95459 [INFO] running `Command { std: "docker" "start" "-a" "5493334629f76cb4be0cb1dd5a4c4fa109bf25019b3fd5c279a8d881d6f95459", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/seqsizzle-7d4f95e31a6e195b) [INFO] [stdout] [INFO] [stdout] running 44 tests [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_all_mismatches ... ok [INFO] [stdout] test app::tests::test_get_mismatches_for_record_no_patterns ... ok [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_basic ... ok [INFO] [stdout] test app::tests::test_get_quality_styling_fasta_record ... ok [INFO] [stdout] test app::tests::test_get_quality_styling_no_config ... ok [INFO] [stdout] test app::tests::test_get_mismatches_for_record_with_patterns ... ok [INFO] [stdout] test app::tests::test_get_quality_styling_with_threshold ... ok [INFO] [stdout] test app::tests::test_get_quality_styling_background_mode ... ok [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_empty_input ... ok [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_with_deletions ... ok [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_multiple_alignments ... ok [INFO] [stdout] test app::tests::test_identify_alignment_mismatches_with_insertions ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_ambiguous_bases ... ok [INFO] [stdout] test app::tests::test_search_with_alignment_returns_alignment_paths ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_exact_match ... ok [INFO] [stdout] test app::tests::test_styling_config_builder ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_different_edit_distances ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_fuzzy_match ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_multiple_matches ... ok [INFO] [stdout] test app::tests::test_styling_config_default ... ok [INFO] [stdout] test app::tests::test_search_methods_return_same_positions_no_match ... ok [INFO] [stdout] test kmer::tests::test_is_homopolymer ... ok [INFO] [stdout] test match_summarizing::test_categorise_read ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_bool_vector_to_intervals_all_false ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_bool_vector_to_intervals_all_true ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_bool_vector_to_intervals_empty ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_bool_vector_to_intervals_mixed ... ok [INFO] [stdout] test kmer::tests::test_filter_substrings_no_removal ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_combined_style_default ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_quality_to_bg_color ... ok [INFO] [stdout] test kmer::tests::test_filter_substrings_simple_removal ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_style_input_new ... ok [INFO] [stdout] test read_stylizing::interval_operations::test_difference ... ok [INFO] [stdout] test tests::test_styling_config_default_italic ... ok [INFO] [stdout] test io::sequence::tests::test_fasta_reading ... ok [INFO] [stdout] test tests::test_styling_config_quality_colors ... ok [INFO] [stdout] test tests::test_styling_config_quality_colors_no_italic ... ok [INFO] [stdout] test io::sequence::tests::test_fastq_reading ... ok [INFO] [stdout] test io::fastq::test_get_index ... ok [INFO] [stdout] test io::sequence::tests::test_position_cache ... ok [INFO] [stdout] test read_stylizing::combined_styling::tests::test_combined_style_chaining ... ok [INFO] [stdout] test tests::test_styling_config_no_italic ... ok [INFO] [stdout] test read_stylizing::interval_operations::test_find_intersections ... ok [INFO] [stdout] test tests::test_styling_config_custom_threshold ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 44 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5493334629f76cb4be0cb1dd5a4c4fa109bf25019b3fd5c279a8d881d6f95459", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5493334629f76cb4be0cb1dd5a4c4fa109bf25019b3fd5c279a8d881d6f95459", kill_on_drop: false }` [INFO] [stdout] 5493334629f76cb4be0cb1dd5a4c4fa109bf25019b3fd5c279a8d881d6f95459