[INFO] fetching crate rustybam 0.1.34... [INFO] testing rustybam-0.1.34 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate rustybam 0.1.34 into /workspace/builds/worker-6-tc2/source [INFO] removed /workspace/builds/worker-6-tc2/source/.cargo/config.toml [INFO] started tweaking crates.io crate rustybam 0.1.34 [INFO] finished tweaking crates.io crate rustybam 0.1.34 [INFO] tweaked toml for crates.io crate rustybam 0.1.34 written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rustybam 0.1.34 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rustybam 0.1.34 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: file `/workspace/builds/worker-6-tc2/source/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] aea94e1b02d5872e57e5438a2f58e3c51881421a0d1a8d93e63e4c463f99b798 [INFO] running `Command { std: "docker" "start" "-a" "aea94e1b02d5872e57e5438a2f58e3c51881421a0d1a8d93e63e4c463f99b798", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "aea94e1b02d5872e57e5438a2f58e3c51881421a0d1a8d93e63e4c463f99b798", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aea94e1b02d5872e57e5438a2f58e3c51881421a0d1a8d93e63e4c463f99b798", kill_on_drop: false }` [INFO] [stdout] aea94e1b02d5872e57e5438a2f58e3c51881421a0d1a8d93e63e4c463f99b798 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 576ee0ac59a4af09464fb44164261c139c67828cca66950d0d164044a0afb780 [INFO] running `Command { std: "docker" "start" "-a" "576ee0ac59a4af09464fb44164261c139c67828cca66950d0d164044a0afb780", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bytemuck v1.22.0 [INFO] [stderr] Compiling miniz_oxide v0.8.8 [INFO] [stderr] Compiling cc v1.2.19 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling portable-atomic v1.11.0 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling futures-core v0.3.31 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling core_affinity v0.8.3 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling openssl-sys v0.9.107 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling libdeflate-sys v0.12.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling env_logger v0.9.3 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling clap_derive v3.2.25 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling calmio_filters v0.1.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling chrono v0.4.40 [INFO] [stderr] Compiling natord v1.0.9 [INFO] [stderr] Compiling calm_io v0.1.1 [INFO] [stderr] Compiling bimap v0.6.3 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling pin-project-internal v1.1.10 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling libdeflater v0.12.0 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling pin-project v1.1.10 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling clap_complete v3.2.5 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling rustybam v0.1.34 (/opt/rustwide/workdir) [INFO] [stderr] Compiling flate2 v1.1.1 [INFO] [stderr] Compiling niffler v2.7.0 [INFO] [stderr] Compiling gzp v0.11.3 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling rust-htslib v0.44.1 [INFO] [stderr] Compiling bio-io v0.3.2 [INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression [INFO] [stdout] --> src/bed.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | (st <= en), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 113 - (st <= en), [INFO] [stdout] 113 + st <= en, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 48s [INFO] running `Command { std: "docker" "inspect" "576ee0ac59a4af09464fb44164261c139c67828cca66950d0d164044a0afb780", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "576ee0ac59a4af09464fb44164261c139c67828cca66950d0d164044a0afb780", kill_on_drop: false }` [INFO] [stdout] 576ee0ac59a4af09464fb44164261c139c67828cca66950d0d164044a0afb780 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 58792f9edf8fa2f6d381de076c63f6479b0d8642ce2cfd898ea5b2f34ec4951d [INFO] running `Command { std: "docker" "start" "-a" "58792f9edf8fa2f6d381de076c63f6479b0d8642ce2cfd898ea5b2f34ec4951d", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression [INFO] [stdout] --> src/bed.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | (st <= en), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 113 - (st <= en), [INFO] [stdout] 113 + st <= en, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rustybam v0.1.34 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression [INFO] [stdout] --> src/bed.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | (st <= en), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 113 - (st <= en), [INFO] [stdout] 113 + st <= en, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.23s [INFO] running `Command { std: "docker" "inspect" "58792f9edf8fa2f6d381de076c63f6479b0d8642ce2cfd898ea5b2f34ec4951d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "58792f9edf8fa2f6d381de076c63f6479b0d8642ce2cfd898ea5b2f34ec4951d", kill_on_drop: false }` [INFO] [stdout] 58792f9edf8fa2f6d381de076c63f6479b0d8642ce2cfd898ea5b2f34ec4951d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ca484607ccdd45172df8df50097c4dfe29e34c4b23183d124544c44595a24136 [INFO] running `Command { std: "docker" "start" "-a" "ca484607ccdd45172df8df50097c4dfe29e34c4b23183d124544c44595a24136", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] warning: unnecessary parentheses around `match` scrutinee expression [INFO] [stderr] --> src/bed.rs:113:9 [INFO] [stderr] | [INFO] [stderr] 113 | (st <= en), [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 113 - (st <= en), [INFO] [stderr] 113 + st <= en, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/annotate.rs:6:26 [INFO] [stderr] | [INFO] [stderr] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/annotate.rs:10:26 [INFO] [stderr] | [INFO] [stderr] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: `rustybam` (lib) generated 3 warnings (run `cargo fix --lib -p rustybam` to apply 3 suggestions) [INFO] [stderr] warning: `rustybam` (lib test) generated 3 warnings (3 duplicates) [INFO] [stderr] warning: unnecessary parentheses around closure body [INFO] [stderr] --> src/main.rs:206:60 [INFO] [stderr] | [INFO] [stderr] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stderr] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `rustybam` (bin "rustybam" test) generated 1 warning (run `cargo fix --bin "rustybam" --tests` to apply 1 suggestion) [INFO] [stderr] warning: `rustybam` (bin "rb" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.35s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustybam-75e3182982ac891f) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test annotate::tests::test_chrom_specific_overlaps ... ok [INFO] [stdout] test suns::tests::test_convert ... ok [INFO] [stdout] test suns::tests::test_sun_finding ... ok [INFO] [stdout] test bamstats::tests::test_add_cigar_stats ... ok [INFO] [stdout] test liftover::tests::check_invertible ... ok [INFO] [stdout] test trim_overlap::tests::test_inversion_trimming ... ok [INFO] [stdout] test liftover::tests::test_aln_pair_liftover ... ok [INFO] [stdout] test bamstats::tests::test_cigar_stats_from_test_file ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rb-2b56b40b300ea0e7) [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rustybam-76b9c21e1b4af745) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stderr] Doc-tests rustybam [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] warning: unnecessary parentheses around `match` scrutinee expression [INFO] [stderr] --> src/bed.rs:113:9 [INFO] [stderr] | [INFO] [stderr] 113 | (st <= en), [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 113 - (st <= en), [INFO] [stderr] 113 + st <= en, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test src/bed.rs - bed::parse_region (line 89) ... FAILED [INFO] [stdout] test src/liftover.rs - liftover::break_paf_on_indels (line 172) ... FAILED [INFO] [stdout] test src/bamstats.rs - bamstats::parse_md_for_stats (line 39) ... FAILED [INFO] [stdout] test src/bed.rs - bed::has_overlap (line 49) ... FAILED [INFO] [stdout] test src/getfasta.rs - getfasta::get_fasta (line 12) ... FAILED [INFO] [stdout] test src/nucfreq.rs - nucfreq::region_nucfreq (line 99) ... FAILED [INFO] [stdout] test src/paf.rs - paf::PafRecord::get_target_as_region (line 470) ... ok [INFO] [stdout] test src/fastx.rs - fastx::run_split_fastx (line 5) ... FAILED [INFO] [stdout] test src/myio.rs - myio::reader (line 38) ... FAILED [INFO] [stdout] test src/paf.rs - paf::Paf::sam_header (line 309) ... FAILED [INFO] [stdout] test src/nucfreq.rs - nucfreq::nucfreq (line 41) ... FAILED [INFO] [stdout] test src/bed.rs - bed::split_region (line 197) ... FAILED [INFO] [stdout] test src/paf.rs - paf::Paf::from_file (line 54) ... FAILED [INFO] [stdout] test src/paf.rs - paf::PafRecord::new (line 372) ... FAILED [INFO] [stdout] test src/paf.rs - paf::cigar_from_str (line 1000) ... FAILED [INFO] [stdout] test src/paf.rs - paf::PafRecord::to_sam_string (line 861) ... FAILED [INFO] [stdout] test src/paf.rs - paf::update_cigar_opt_len (line 978) ... ok [INFO] [stdout] test src/trim_overlap.rs - trim_overlap::trim_overlapping_pafs (line 22) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::get_shortest_subseq_size (line 62) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::from_file (line 50) ... ok [INFO] [stdout] test src/paf.rs - paf::consumes_query (line 953) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::get_longest_perfect_repeats (line 85) ... ok [INFO] [stdout] test src/paf.rs - paf::is_match (line 966) ... ok [INFO] [stdout] test src/bed.rs - bed::parse_bed_rec (line 129) ... ok [INFO] [stdout] test src/paf.rs - paf::cs_to_cigar (line 1103) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::convert_from_idx (line 144) ... ok [INFO] [stdout] test src/bed.rs - bed::parse_bed (line 165) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/bed.rs - bed::parse_region (line 89) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcgsPZGE/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcgsPZGE/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestb41CxJ/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/liftover.rs - liftover::break_paf_on_indels (line 172) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcMHSd9X/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcMHSd9X/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctesttpsJHo/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bamstats.rs - bamstats::parse_md_for_stats (line 39) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcxyjE5c/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcxyjE5c/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestluYSCx/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::has_overlap (line 49) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcHMKMqr/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcHMKMqr/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestOWKRyO/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/getfasta.rs - getfasta::get_fasta (line 12) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcnQBG2B/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcnQBG2B/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest0XCI31/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/nucfreq.rs - nucfreq::region_nucfreq (line 99) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcIsuKyu/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcIsuKyu/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestmzJMYw/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/fastx.rs - fastx::run_split_fastx (line 5) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustceOtcOz/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustceOtcOz/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestQ0YJJP/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/myio.rs - myio::reader (line 38) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcS9iK89/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcS9iK89/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestfPUM95/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::Paf::sam_header (line 309) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcSMsnrj/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcSMsnrj/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestckBZp7/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/nucfreq.rs - nucfreq::nucfreq (line 41) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc2pFnCx/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc2pFnCx/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestuJIcvG/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::split_region (line 197) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcoKdOM4/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcoKdOM4/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest13Qur5/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::Paf::from_file (line 54) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcbFjTc6/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcbFjTc6/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestFtECqx/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::PafRecord::new (line 372) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcjH6kJC/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcjH6kJC/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestSSW6Xx/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::cigar_from_str (line 1000) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcinaaN5/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcinaaN5/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestANb4hw/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::PafRecord::to_sam_string (line 861) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcTu1jC7/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-17ee4542bde92ecf,libnum_format-38764826fb2286ed,libarrayvec-41dcfe80309d7422,libnatord-17df5b7ba74eac9e,libneedletail-d7ff92a976adaef0,libbuffer_redux-386537118ff56ded,libxz2-e1383d16db2ddb44,libbzip2-1c3c237f84cc8c03,libclap-384652b9c7e1baa3,libatty-fa1e52bfb4fd572d,libstrsim-d620f0ade87b0f1f,libtermcolor-96a9ed65821a6544,libtextwrap-02644210a6ad5fa2,libindexmap-23fa4596b3813a6d,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libbio_io-e1809e7bfaedd41b,liblog-ba604b77dad33fe2,libniffler-9fd2926a4c796598,libthiserror-cb5c42e2436b4dd1,libindicatif-95c55ddfe4b29ec3,libportable_atomic-5a60ab32f8ae7862,librayon-8c9c043f71b8b9db,librayon_core-eae9644c310958e7,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libnumber_prefix-8479f39d71e80d3e,libconsole-1df92fdc58871c21,libunicode_width-79cfce0a776a55d3,libonce_cell-0ba6aecba7086d38,libgzp-fdfc999bff2a361e,libcore_affinity-3199c6e04872832f,libnum_cpus-81014cb466008028,liblibdeflater-8b522dbaf2064fc2,liblibdeflate_sys-2bc4654e4911ba66,libsnap-b2d4f7df4b7b1de7,libflume-94fa3953acc7dab1,libspin-391fe0190f8b0199,liblock_api-47948af6bba6d2a8,libscopeguard-d52bd00767847e44,libpin_project-d1f6846bb7c16a78,libfutures_sink-b53a6375eb17e00c,libfutures_core-fb8ae24b3d123d37,libnanorand-4241f1dc81d62eb1,libflate2-102c407a00e0b257,libminiz_oxide-72957411e009f840,libadler2-b931b79841890bad,libcrc32fast-ec6b1847c42b19ed,libbytes-bfe11088fe358bd1,librust_htslib-0f497d83e97508e7,libieee754-389556e2883b0bde,libhts_sys-e23cab30c15a4c33,liblzma_sys-a946bb08aa73babe,libcurl_sys-c632353a7345e408,libopenssl_sys-b3674d580a0b4998,liblibz_sys-44ca079195137e13,libbzip2_sys-2f08a27e35bb5ca8,liburl-87e7c5c5e5a7121c,libidna-4405f56bc7627008,libidna_adapter-826e272443ec8358,libicu_normalizer-a2a04cf4d67eb6e3,libicu_normalizer_data-e09fff8170d349d0,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-9812bbe5aac27f0d,libicu_properties-1a2d232f7f94b599,libicu_properties_data-1ec6aa7f6733282c,libicu_locid_transform-98f9d696ccb3ca01,libicu_locid_transform_data-e3076faba4d91e2e,libicu_collections-029c972aa58c9e52,libicu_provider-2b3fd125e5264e3e,libicu_locid-6dc41e77088431be,liblitemap-705c4d2af7d10c57,libtinystr-a8db8131d8b34a19,libzerovec-6b5c04b72af95fb6,libwriteable-45c783735d88c2b0,libyoke-80f48bd9313088b2,libzerofrom-55815e3f1eef679d,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,liblinear_map-4e56c30b106c3d59,libcolored-caab0af0c06a97f8,libitertools-bb29c9ce35ed7fc6,libbio-7ef2340e7e921097,libstrum-6a21f72212d45f50,libcsv-c6dfe6191ad86732,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-62d3130c0d5f49a7,libbytecount-a93c4f57a3fddffd,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-2599e9e053906dc5,libstatrs-6b436eb3d34d7824,libnalgebra-4b63093fda10268f,librand_distr-5dad40d8393b9908,libnum_rational-59e7ae7aef7adccb,libtypenum-b636c2b461885073,libsimba-f72e66b6830e4367,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-108f5d157172cd04,librand_chacha-9c78750e9003fcd0,libppv_lite86-ad22283f97e8e369,libzerocopy-c1e5f46d1ee09af2,librand_core-513903d6476bc642,libgetrandom-bc3369efae748ead,liblibc-c5faa46acfc5e47f,libcfg_if-33ef6c02a07f9fec,libordered_float-986036be7b36df34,libndarray-35f67b01e2194682,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-5b64c6d84a8186cf,librawpointer-a726d041f28ef5ec,libmultimap-739832b4cce3ecd4,libitertools-447191bc284999e7,libeither-ef22a4c75605e12f,libanyhow-1062fd8720902979,libnum_integer-6f51ea2b2b20264c,libbv-aed185ea3c87a36e,libvec_map-b2d6178ee785e675,libserde-96ad93c13334c64a,libbit_set-140750763f727513,libbit_vec-8e677f8183f998ef,libbio_types-46149179f643e254,libthiserror-c1e609e9f862ee89,libregex-07d59f3792584a21,libregex_automata-b16ca0c62e99f813,libaho_corasick-5318fee7af990b33,libmemchr-3ffe5f7a52883367,libregex_syntax-13fc688ae7f36982,libfxhash-6ae122e7d9b05b12,libbyteorder-1efcbe4f07366651,libpetgraph-7297448b2e292b95,libindexmap-78b0b1f8c49dc94b,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-3c4adce085318424,libnewtype_derive-e7c805e74218b45b,liblazy_static-b3603208c0de2608,libcustom_derive-7dc5746d463a3d5a,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcTu1jC7/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-17f61467ac8761d8/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b1bdd4557091711f/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-62777703a72de3c7/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-3757ee3a6f86ef35/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-313a3886c4c19116/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-b6254b42fc76cc96/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-548cf39af9dfae42/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest1dwpu2/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/bamstats.rs - bamstats::parse_md_for_stats (line 39) [INFO] [stdout] src/bed.rs - bed::has_overlap (line 49) [INFO] [stdout] src/bed.rs - bed::parse_region (line 89) [INFO] [stdout] src/bed.rs - bed::split_region (line 197) [INFO] [stdout] src/fastx.rs - fastx::run_split_fastx (line 5) [INFO] [stdout] src/getfasta.rs - getfasta::get_fasta (line 12) [INFO] [stdout] src/liftover.rs - liftover::break_paf_on_indels (line 172) [INFO] [stdout] src/myio.rs - myio::reader (line 38) [INFO] [stdout] src/nucfreq.rs - nucfreq::nucfreq (line 41) [INFO] [stdout] src/nucfreq.rs - nucfreq::region_nucfreq (line 99) [INFO] [stdout] src/paf.rs - paf::Paf::from_file (line 54) [INFO] [stdout] src/paf.rs - paf::Paf::sam_header (line 309) [INFO] [stdout] src/paf.rs - paf::PafRecord::new (line 372) [INFO] [stdout] src/paf.rs - paf::PafRecord::to_sam_string (line 861) [INFO] [stdout] src/paf.rs - paf::cigar_from_str (line 1000) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 12 passed; 15 failed; 0 ignored; 0 measured; 0 filtered out; finished in 25.47s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "ca484607ccdd45172df8df50097c4dfe29e34c4b23183d124544c44595a24136", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ca484607ccdd45172df8df50097c4dfe29e34c4b23183d124544c44595a24136", kill_on_drop: false }` [INFO] [stdout] ca484607ccdd45172df8df50097c4dfe29e34c4b23183d124544c44595a24136