[INFO] fetching crate rdkit-rs 0.1.0... [INFO] testing rdkit-rs-0.1.0 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate rdkit-rs 0.1.0 into /workspace/builds/worker-1-tc2/source [INFO] started tweaking crates.io crate rdkit-rs 0.1.0 [INFO] finished tweaking crates.io crate rdkit-rs 0.1.0 [INFO] tweaked toml for crates.io crate rdkit-rs 0.1.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rdkit-rs 0.1.0 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 41 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 892581603ca5d691975fdf17cf493a6976736766e94e1efb2175520d1e539e2d [INFO] running `Command { std: "docker" "start" "-a" "892581603ca5d691975fdf17cf493a6976736766e94e1efb2175520d1e539e2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "892581603ca5d691975fdf17cf493a6976736766e94e1efb2175520d1e539e2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "892581603ca5d691975fdf17cf493a6976736766e94e1efb2175520d1e539e2d", kill_on_drop: false }` [INFO] [stdout] 892581603ca5d691975fdf17cf493a6976736766e94e1efb2175520d1e539e2d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 23c56b51eaf778445fe171349580b61bebafef493b6b6aefcbbe758df3614c3b [INFO] running `Command { std: "docker" "start" "-a" "23c56b51eaf778445fe171349580b61bebafef493b6b6aefcbbe758df3614c3b", kill_on_drop: false }` [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling cxxbridge-flags v1.0.173 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling cc v1.2.34 [INFO] [stderr] Compiling indexmap v2.11.0 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling link-cplusplus v1.0.10 [INFO] [stderr] Compiling cxx v1.0.173 [INFO] [stderr] Compiling cxxbridge-macro v1.0.173 [INFO] [stderr] Compiling rdkit-ffi v0.1.0+rdkit-2022-09-1-pre [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.45s [INFO] running `Command { std: "docker" "inspect" "23c56b51eaf778445fe171349580b61bebafef493b6b6aefcbbe758df3614c3b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23c56b51eaf778445fe171349580b61bebafef493b6b6aefcbbe758df3614c3b", kill_on_drop: false }` [INFO] [stdout] 23c56b51eaf778445fe171349580b61bebafef493b6b6aefcbbe758df3614c3b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 72e832050076f01dffa751400913a8fbcb42e35725b69d6c49b7c53807f8c733 [INFO] running `Command { std: "docker" "start" "-a" "72e832050076f01dffa751400913a8fbcb42e35725b69d6c49b7c53807f8c733", kill_on_drop: false }` [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcNuMQ11/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{librdkit_ffi-d2110f18ef9e3653,libcxx-36455bf04439ad72,libfoldhash-40583849f0199317,liblink_cplusplus-27d5e4a9fb6b6755}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcNuMQ11/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/cxx-082672dd2b5eeb71/out" "-L" "/opt/rustwide/target/debug/build/link-cplusplus-13b232883d70a375/out" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/rdkit_rs-60a12e8ec27dbd17" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: undefined symbol: cxxbridge1$shared_ptr$RDKit$RWMol$drop [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..RWMol$u20$as$u20$cxx..shared_ptr..SharedPtrTarget$GT$::__drop::h7f427d9b702c99ca) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$raw [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h6e2305a2c080e9d5) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$drop [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hb4074d42f2d697a7) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$raw [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h2e2c030ea498584e) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$drop [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h183ec1f555c371a6) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$raw [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h41f8fefcf49be887) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$drop [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h318398fd3f2e2900) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$FMCS_find_mcs [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::FMCS_find_mcs::hb2eca3c81ee31e62) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_new [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_new::h0e9ac1461f88f623) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_atoms [INFO] [stdout] >>> referenced by lib.rs:28 (src/lib.rs:28) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_atoms::h185df5c095d61d2c) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_bonds [INFO] [stdout] >>> referenced by lib.rs:29 (src/lib.rs:29) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_bonds::h302a043396432bba) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_atoms [INFO] [stdout] >>> referenced by lib.rs:11 (src/lib.rs:11) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_atoms::h7559526167988f68) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_bonds [INFO] [stdout] >>> referenced by lib.rs:13 (src/lib.rs:13) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_bonds::ha3a3b9e1027cdc4e) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$SmilesParse_smi_to_mol [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::SmilesParse_smi_to_mol::hbc5030f73a548781) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_smarts_string [INFO] [stdout] >>> referenced by lib.rs:30 (src/lib.rs:30) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_smarts_string::he86bd5d335d81688) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_fingerprint [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_fingerprint::h21c280bb82afadf3) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_emplace_back [INFO] [stdout] >>> referenced by lib.rs:16 (src/lib.rs:16) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_emplace_back::h4b9536670cd308a9) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_heavy_atoms [INFO] [stdout] >>> referenced by lib.rs:12 (src/lib.rs:12) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_heavy_atoms::h4f41d40546d2cfba) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_nonzero_elements_size [INFO] [stdout] >>> referenced by lib.rs:23 (src/lib.rs:23) [INFO] [stdout] >>> rdkit_ffi-d2110f18ef9e3653.rdkit_ffi.e40f9a73022aabd-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_nonzero_elements_size::h304548a257bbab83) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d2110f18ef9e3653.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rdkit-rs` (lib test) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "72e832050076f01dffa751400913a8fbcb42e35725b69d6c49b7c53807f8c733", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72e832050076f01dffa751400913a8fbcb42e35725b69d6c49b7c53807f8c733", kill_on_drop: false }` [INFO] [stdout] 72e832050076f01dffa751400913a8fbcb42e35725b69d6c49b7c53807f8c733