[INFO] fetching crate phylodm 3.2.0... [INFO] testing phylodm-3.2.0 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate phylodm 3.2.0 into /workspace/builds/worker-1-tc2/source [INFO] removed /workspace/builds/worker-1-tc2/source/.cargo/config.toml [INFO] started tweaking crates.io crate phylodm 3.2.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate phylodm 3.2.0 [INFO] tweaked toml for crates.io crate phylodm 3.2.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate phylodm 3.2.0 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate phylodm 3.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 13a1dd26ed7c1703eb8f955fdaeabce8b1121aaabd9025a706e8b94f5ab1b89f [INFO] running `Command { std: "docker" "start" "-a" "13a1dd26ed7c1703eb8f955fdaeabce8b1121aaabd9025a706e8b94f5ab1b89f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "13a1dd26ed7c1703eb8f955fdaeabce8b1121aaabd9025a706e8b94f5ab1b89f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "13a1dd26ed7c1703eb8f955fdaeabce8b1121aaabd9025a706e8b94f5ab1b89f", kill_on_drop: false }` [INFO] [stdout] 13a1dd26ed7c1703eb8f955fdaeabce8b1121aaabd9025a706e8b94f5ab1b89f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35f1938826287d6d88a5e8063e49ab45f229305f1100d7ead94fef1b2910e8de [INFO] running `Command { std: "docker" "start" "-a" "35f1938826287d6d88a5e8063e49ab45f229305f1100d7ead94fef1b2910e8de", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.87 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling libc v0.2.159 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling unicode-segmentation v1.12.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling colorchoice v1.0.2 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling anstyle-parse v0.2.5 [INFO] [stderr] Compiling anstyle-query v1.1.1 [INFO] [stderr] Compiling anstyle v1.0.8 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling svg v0.15.1 [INFO] [stderr] Compiling getopt v1.1.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling anstream v0.6.15 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling roxmltree v0.19.0 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.79 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling derive_more-impl v1.0.0 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling derive_more v1.0.0 [INFO] [stderr] Compiling regex v1.11.0 [INFO] [stderr] Compiling env_filter v0.1.2 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling env_logger v0.11.5 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling structopt v0.3.26 [INFO] [stderr] Compiling random_color v0.8.0 [INFO] [stderr] Compiling light_phylogeny v2.4.1 [INFO] [stderr] Compiling phylodm v3.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.07s [INFO] running `Command { std: "docker" "inspect" "35f1938826287d6d88a5e8063e49ab45f229305f1100d7ead94fef1b2910e8de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35f1938826287d6d88a5e8063e49ab45f229305f1100d7ead94fef1b2910e8de", kill_on_drop: false }` [INFO] [stdout] 35f1938826287d6d88a5e8063e49ab45f229305f1100d7ead94fef1b2910e8de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 08f1014f9ffc738c7e3e82748e4342f7d6b2a58cdcb281751b8e75cff6f0f4a9 [INFO] running `Command { std: "docker" "start" "-a" "08f1014f9ffc738c7e3e82748e4342f7d6b2a58cdcb281751b8e75cff6f0f4a9", kill_on_drop: false }` [INFO] [stderr] Compiling phylodm v3.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.19s [INFO] running `Command { std: "docker" "inspect" "08f1014f9ffc738c7e3e82748e4342f7d6b2a58cdcb281751b8e75cff6f0f4a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08f1014f9ffc738c7e3e82748e4342f7d6b2a58cdcb281751b8e75cff6f0f4a9", kill_on_drop: false }` [INFO] [stdout] 08f1014f9ffc738c7e3e82748e4342f7d6b2a58cdcb281751b8e75cff6f0f4a9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 88d46d69bb1124a425f8d0cac37fa8fa75b5d992c4491dbeabf3b51fff09b513 [INFO] running `Command { std: "docker" "start" "-a" "88d46d69bb1124a425f8d0cac37fa8fa75b5d992c4491dbeabf3b51fff09b513", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phylodm-5c6dc25eba0939ed) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test util::test_create_row_vec_from_mat_dims ... ok [INFO] [stdout] test util::test_mat_size_from_row_vec_size ... ok [INFO] [stdout] test util::test_argsort_vec ... ok [INFO] [stdout] test util::test_row_vec_size_from_mat_size ... ok [INFO] [stdout] test util::test_row_idx_from_mat_coords ... ok [INFO] [stdout] test util::test_row_vec_to_arr_idx ... ok [INFO] [stdout] test util::test_row_vec_to_symmat ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phylodm-c62b862caabdc01b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/tree.rs (/opt/rustwide/target/debug/deps/tree-e275e06c0ff74742) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test tests::test_get_nearest_taxa ... ok [INFO] [stdout] test tests::test_update_edge_lengths ... ok [INFO] [stdout] test tests::test_tree ... ok [INFO] [stdout] test tests::test_tree_norm ... ok [INFO] [stdout] test tests::test_tree_dm_twice ... ok [INFO] [stdout] test tests::test_set_lengths ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/util.rs (/opt/rustwide/target/debug/deps/util-8f4dc796d1b69545) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_integration ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests phylodm [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test src/tree/types.rs - tree::types::NodeId (line 10) ... ok [INFO] [stdout] test src/util.rs - util::row_idx_from_mat_coords (line 13) ... ok [INFO] [stdout] test src/tree/types.rs - tree::types::Edge (line 21) ... ok [INFO] [stdout] test src/util.rs - util::row_vec_size_from_mat_size (line 50) ... ok [INFO] [stdout] test src/util.rs - util::mat_size_from_row_vec_size (line 104) ... ok [INFO] [stdout] test src/pdm.rs - pdm::PDM (line 18) ... ok [INFO] [stdout] test src/tree/types.rs - tree::types::Taxon (line 43) ... ok [INFO] [stdout] test src/util.rs - util::row_vec_to_symmat (line 129) ... ok [INFO] [stdout] test src/util.rs - util::create_row_vec_from_mat_dims (line 77) ... ok [INFO] [stdout] test src/tree/types.rs - tree::types::NodeDepth (line 32) ... ok [INFO] [stdout] test src/util.rs - util::argsort_vec (line 198) ... ok [INFO] [stdout] test src/util.rs - util::row_vec_to_arr_idx (line 167) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.77s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "88d46d69bb1124a425f8d0cac37fa8fa75b5d992c4491dbeabf3b51fff09b513", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "88d46d69bb1124a425f8d0cac37fa8fa75b5d992c4491dbeabf3b51fff09b513", kill_on_drop: false }` [INFO] [stdout] 88d46d69bb1124a425f8d0cac37fa8fa75b5d992c4491dbeabf3b51fff09b513