[INFO] fetching crate molecules 0.1.7... [INFO] testing molecules-0.1.7 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1 [INFO] extracting crate molecules 0.1.7 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate molecules 0.1.7 [INFO] finished tweaking crates.io crate molecules 0.1.7 [INFO] tweaked toml for crates.io crate molecules 0.1.7 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate molecules 0.1.7 on toolchain b83b707f97d809763b7861afa7638871f3339a33 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 84 packages to latest compatible versions [INFO] [stderr] Adding itertools v0.12.1 (available: v0.14.0) [INFO] [stderr] Adding kiddo v4.2.1 (available: v5.2.2) [INFO] [stderr] Adding petgraph v0.6.5 (available: v0.8.2) [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.2) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2452b8c6aee843acbeccd67db209418e6aa8a2c19bf03ad8816162b9909a4c74 [INFO] running `Command { std: "docker" "start" "-a" "2452b8c6aee843acbeccd67db209418e6aa8a2c19bf03ad8816162b9909a4c74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2452b8c6aee843acbeccd67db209418e6aa8a2c19bf03ad8816162b9909a4c74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2452b8c6aee843acbeccd67db209418e6aa8a2c19bf03ad8816162b9909a4c74", kill_on_drop: false }` [INFO] [stdout] 2452b8c6aee843acbeccd67db209418e6aa8a2c19bf03ad8816162b9909a4c74 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b73e7c70dc8289ca1dba65def2f5d8b321702014eab278145e73c253208e5b82 [INFO] running `Command { std: "docker" "start" "-a" "b73e7c70dc8289ca1dba65def2f5d8b321702014eab278145e73c253208e5b82", kill_on_drop: false }` [INFO] [stderr] Compiling tracing-core v0.1.34 [INFO] [stderr] Compiling az v1.2.1 [INFO] [stderr] Compiling generator v0.8.7 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling fixed v1.29.0 [INFO] [stderr] Compiling thread_local v1.1.9 [INFO] [stderr] Compiling nu-ansi-term v0.50.1 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling init_with v1.1.0 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.20 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling ubyte v0.10.4 [INFO] [stderr] Compiling sorted-vec v0.8.8 [INFO] [stderr] Compiling elapsed v0.1.2 [INFO] [stderr] Compiling divrem v1.0.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling chemistry_consts v0.1.6 [INFO] [stderr] Compiling nohash-hasher v0.2.0 [INFO] [stderr] Compiling tracing-attributes v0.1.30 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling kiddo v4.2.1 [INFO] [stderr] Compiling molecules v0.1.7 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `additional_nodes` [INFO] [stdout] --> src/graphs.rs:191:5 [INFO] [stdout] | [INFO] [stdout] 191 | additional_nodes: &[usize], [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_additional_nodes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `combine` is never used [INFO] [stdout] --> src/molecular_formula.rs:428:8 [INFO] [stdout] | [INFO] [stdout] 338 | impl IsotopicPattern { [INFO] [stdout] | -------------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 428 | fn combine(&self, other: &Self, n_peaks: usize) -> Self { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 38.59s [INFO] running `Command { std: "docker" "inspect" "b73e7c70dc8289ca1dba65def2f5d8b321702014eab278145e73c253208e5b82", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b73e7c70dc8289ca1dba65def2f5d8b321702014eab278145e73c253208e5b82", kill_on_drop: false }` [INFO] [stdout] b73e7c70dc8289ca1dba65def2f5d8b321702014eab278145e73c253208e5b82 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a5ad311729c5ff953a2c5c321d5a84e9ff25f452e5c4f8381228247dd6577219 [INFO] running `Command { std: "docker" "start" "-a" "a5ad311729c5ff953a2c5c321d5a84e9ff25f452e5c4f8381228247dd6577219", kill_on_drop: false }` [INFO] [stderr] Compiling molecules v0.1.7 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `additional_nodes` [INFO] [stdout] --> src/graphs.rs:191:5 [INFO] [stdout] | [INFO] [stdout] 191 | additional_nodes: &[usize], [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_additional_nodes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `combine` is never used [INFO] [stdout] --> src/molecular_formula.rs:428:8 [INFO] [stdout] | [INFO] [stdout] 338 | impl IsotopicPattern { [INFO] [stdout] | -------------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 428 | fn combine(&self, other: &Self, n_peaks: usize) -> Self { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `additional_nodes` [INFO] [stdout] --> src/graphs.rs:191:5 [INFO] [stdout] | [INFO] [stdout] 191 | additional_nodes: &[usize], [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_additional_nodes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `combine` is never used [INFO] [stdout] --> src/molecular_formula.rs:428:8 [INFO] [stdout] | [INFO] [stdout] 338 | impl IsotopicPattern { [INFO] [stdout] | -------------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 428 | fn combine(&self, other: &Self, n_peaks: usize) -> Self { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.74s [INFO] running `Command { std: "docker" "inspect" "a5ad311729c5ff953a2c5c321d5a84e9ff25f452e5c4f8381228247dd6577219", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5ad311729c5ff953a2c5c321d5a84e9ff25f452e5c4f8381228247dd6577219", kill_on_drop: false }` [INFO] [stdout] a5ad311729c5ff953a2c5c321d5a84e9ff25f452e5c4f8381228247dd6577219 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0162d2cf2628283542bbe05442ef7ff55cdc756f540e946dc7dfb1cfba0f1a42 [INFO] running `Command { std: "docker" "start" "-a" "0162d2cf2628283542bbe05442ef7ff55cdc756f540e946dc7dfb1cfba0f1a42", kill_on_drop: false }` [INFO] [stderr] warning: unused variable: `additional_nodes` [INFO] [stderr] --> src/graphs.rs:191:5 [INFO] [stderr] | [INFO] [stderr] 191 | additional_nodes: &[usize], [INFO] [stderr] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_additional_nodes` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: method `combine` is never used [INFO] [stderr] --> src/molecular_formula.rs:428:8 [INFO] [stderr] | [INFO] [stderr] 338 | impl IsotopicPattern { [INFO] [stderr] | -------------------- method in this implementation [INFO] [stderr] ... [INFO] [stderr] 428 | fn combine(&self, other: &Self, n_peaks: usize) -> Self { [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `molecules` (lib) generated 2 warnings [INFO] [stderr] warning: `molecules` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/molecules-abdc9d118f90be1f) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test io::tests::test_parse_smiles_with_complex_atom_and_hydrogen ... ok [INFO] [stdout] test io::tests::test_parse_smiles ... ok [INFO] [stdout] test io::tests::test_bond_parsing ... ok [INFO] [stdout] test io::tests::test_parse_smiles_with_chiral_class ... ok [INFO] [stdout] test io::tests::test_parse_smiles_with_isotope ... ok [INFO] [stdout] test molecule::tests::test_cross_product ... ok [INFO] [stdout] test io::tests::test_submolecule ... ok [INFO] [stdout] test io::tests::test_parse_smiles_with_complex_atom_and_isotope ... ok [INFO] [stdout] test molecule::tests::test_bond_angle ... ok [INFO] [stdout] test io::tests::parse_test_file ... ok [INFO] [stdout] test molecule::tests::test_extract_atom ... ok [INFO] [stdout] test molecule::tests::test_vector_angle ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests molecules [INFO] [stdout] [INFO] [stdout] running 45 tests [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::MolecularFormula::from_str (line 286) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::MolecularFormula::molecular_mass (line 86) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::MolecularFormula::merge (line 28) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::MolecularFormula::combine (line 48) ... ok [INFO] [stdout] test src/io.rs - io::SMILESParser::parse_smiles (line 47) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::IsotopicPattern::add_entry (line 386) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::IsotopicPattern::add (line 368) ... ok [INFO] [stdout] test src/graphs.rs - graphs::Molecule::to_gml (line 13) ... ok [INFO] [stdout] test src/molecular_formula.rs - molecular_formula::MolecularFormula::monoisotopic_mass (line 68) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::actual_valency (line 113) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::expected_valency (line 136) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::distance_squared (line 263) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::is_bonded (line 215) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::distance (line 242) ... ok [INFO] [stdout] test src/molecule.rs - molecule::MolecularFormula::combine (line 1438) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Atom::potential_energy (line 292) ... ok [INFO] [stdout] test src/molecule.rs - molecule::MolecularFormula::monoisotopic_mass (line 1458) ... ok [INFO] [stdout] test src/molecule.rs - molecule::MolecularFormula::from_str (line 1532) ... ok [INFO] [stdout] test src/molecule.rs - molecule::MolecularFormula::merge (line 1417) ... ok [INFO] [stdout] test src/molecule.rs - molecule::MolecularFormula::molecular_mass (line 1476) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::cmp_electronegativities (line 659) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::get_bonds (line 858) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::degrees (line 1057) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::find_shortest_path_of_set (line 1943) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::dihedral_angle (line 1022) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::center (line 915) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::from_xyz (line 590) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::dihedrals (line 983) ... ok [INFO] [stdout] test src/molecule.rs - molecule::extract_atom_pdb (line 1869) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::angle_between (line 312) ... ok [INFO] [stdout] test src/molecule.rs - molecule::extract_atom_cif (line 1905) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector (line 8) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::cross (line 294) ... ok [INFO] [stdout] test src/molecule.rs - molecule::Molecule::shortest_path (line 1990) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::default (line 99) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::angle_between_points (line 356) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::distance (line 234) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::difference (line 169) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::dot (line 215) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::from_vec (line 120) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::distance_squared (line 249) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::random_unit_vector (line 267) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::new (line 142) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::length (line 193) ... ok [INFO] [stdout] test src/vector.rs - vector::Vector::normalize (line 337) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 45 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 7.24s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0162d2cf2628283542bbe05442ef7ff55cdc756f540e946dc7dfb1cfba0f1a42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0162d2cf2628283542bbe05442ef7ff55cdc756f540e946dc7dfb1cfba0f1a42", kill_on_drop: false }` [INFO] [stdout] 0162d2cf2628283542bbe05442ef7ff55cdc756f540e946dc7dfb1cfba0f1a42