[INFO] fetching crate microBioRust-seqmetrics 0.1.2...
[INFO] testing microBioRust-seqmetrics-0.1.2 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1
[INFO] extracting crate microBioRust-seqmetrics 0.1.2 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] finished tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] tweaked toml for crates.io crate microBioRust-seqmetrics 0.1.2 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate microBioRust-seqmetrics 0.1.2 on toolchain b83b707f97d809763b7861afa7638871f3339a33
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microBioRust-seqmetrics 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 635e275df5a47c0f04319c9ce82b79358e9d6d02b6ba0860753190bd4e61e031
[INFO] running `Command { std: "docker" "start" "-a" "635e275df5a47c0f04319c9ce82b79358e9d6d02b6ba0860753190bd4e61e031", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "635e275df5a47c0f04319c9ce82b79358e9d6d02b6ba0860753190bd4e61e031", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "635e275df5a47c0f04319c9ce82b79358e9d6d02b6ba0860753190bd4e61e031", kill_on_drop: false }`
[INFO] [stdout] 635e275df5a47c0f04319c9ce82b79358e9d6d02b6ba0860753190bd4e61e031
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d3b1e971037771fa873e2a1f10820ab56e4ee053443e680723f414cf8a7aa1c1
[INFO] running `Command { std: "docker" "start" "-a" "d3b1e971037771fa873e2a1f10820ab56e4ee053443e680723f414cf8a7aa1c1", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling clap_builder v4.5.40
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling clap_derive v4.5.40
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]    Compiling signal-hook-registry v1.4.5
[INFO] [stderr]    Compiling socket2 v0.5.10
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling mio v1.0.4
[INFO] [stderr]    Compiling protein-translate v0.2.0
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling tokio v1.45.1
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling microBioRust v0.1.2
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 45.03s
[INFO] running `Command { std: "docker" "inspect" "d3b1e971037771fa873e2a1f10820ab56e4ee053443e680723f414cf8a7aa1c1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d3b1e971037771fa873e2a1f10820ab56e4ee053443e680723f414cf8a7aa1c1", kill_on_drop: false }`
[INFO] [stdout] d3b1e971037771fa873e2a1f10820ab56e4ee053443e680723f414cf8a7aa1c1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a025365b4a80ba9def9b609a4831cf57044e170aa0e0725ef1761234c1f7035f
[INFO] running `Command { std: "docker" "start" "-a" "a025365b4a80ba9def9b609a4831cf57044e170aa0e0725ef1761234c1f7035f", kill_on_drop: false }`
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.47s
[INFO] running `Command { std: "docker" "inspect" "a025365b4a80ba9def9b609a4831cf57044e170aa0e0725ef1761234c1f7035f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a025365b4a80ba9def9b609a4831cf57044e170aa0e0725ef1761234c1f7035f", kill_on_drop: false }`
[INFO] [stdout] a025365b4a80ba9def9b609a4831cf57044e170aa0e0725ef1761234c1f7035f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] a899010722ed43f3dc69e28fbda3112cb5fc34e28d09341726702c15d846ade1
[INFO] running `Command { std: "docker" "start" "-a" "a899010722ed43f3dc69e28fbda3112cb5fc34e28d09341726702c15d846ade1", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/microBioRust_seqmetrics-6a53024787b54141)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test metrics::tests::main ... ok
[INFO] [stdout] test metrics::tests::count_aminos ... ok
[INFO] [stdout] test metrics::tests::collect_molecular_weight ... ok
[INFO] [stdout] test metrics::tests::aromaticity ... ok
[INFO] [stdout] test metrics::tests::suggest_transmembrane_domains ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests microBioRust_seqmetrics
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test src/metrics.rs - metrics (line 8) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 147) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 104) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 59) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 197) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/metrics.rs - metrics (line 197) stdout ----
[INFO] [stdout] Test executable failed (exit status: 1).
[INFO] [stdout] 
[INFO] [stdout] stdout:
[INFO] [stdout] gathering records
[INFO] [stdout] gathered ids
[INFO] [stdout] all sequences are the same length, proceeding
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] Error: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: anyhow::error::<impl core::convert::From<E> for anyhow::Error>::from
[INFO] [stdout]    1: <core::result::Result<T,F> as core::ops::try_trait::FromResidual<core::result::Result<core::convert::Infallible,E>>>::from_residual
[INFO] [stdout]    2: microBioRust_seqmetrics::write_dst_csv::write_distances_csv::{{closure}}
[INFO] [stdout]    3: rust_out::main::{{closure}}
[INFO] [stdout]    4: tokio::runtime::park::CachedParkThread::block_on::{{closure}}
[INFO] [stdout]    5: tokio::runtime::park::CachedParkThread::block_on
[INFO] [stdout]    6: tokio::runtime::context::blocking::BlockingRegionGuard::block_on
[INFO] [stdout]    7: tokio::runtime::scheduler::multi_thread::MultiThread::block_on::{{closure}}
[INFO] [stdout]    8: tokio::runtime::context::runtime::enter_runtime
[INFO] [stdout]    9: tokio::runtime::scheduler::multi_thread::MultiThread::block_on
[INFO] [stdout]   10: tokio::runtime::runtime::Runtime::block_on_inner
[INFO] [stdout]   11: tokio::runtime::runtime::Runtime::block_on
[INFO] [stdout]   12: rust_out::main
[INFO] [stdout]   13: core::ops::function::FnOnce::call_once
[INFO] [stdout]   14: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]   15: std::rt::lang_start::{{closure}}
[INFO] [stdout]   16: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/core/src/ops/function.rs:290:21
[INFO] [stdout]   17: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panicking.rs:590:40
[INFO] [stdout]   18: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panicking.rs:553:19
[INFO] [stdout]   19: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panic.rs:359:14
[INFO] [stdout]   20: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/rt.rs:175:24
[INFO] [stdout]   21: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panicking.rs:590:40
[INFO] [stdout]   22: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panicking.rs:553:19
[INFO] [stdout]   23: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/panic.rs:359:14
[INFO] [stdout]   24: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/b83b707f97d809763b7861afa7638871f3339a33/library/std/src/rt.rs:171:5
[INFO] [stdout]   25: std::rt::lang_start
[INFO] [stdout]   26: main
[INFO] [stdout]   27: <unknown>
[INFO] [stdout]   28: __libc_start_main
[INFO] [stdout]   29: _start
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/metrics.rs - metrics (line 197)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 4 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.87s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "a899010722ed43f3dc69e28fbda3112cb5fc34e28d09341726702c15d846ade1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a899010722ed43f3dc69e28fbda3112cb5fc34e28d09341726702c15d846ade1", kill_on_drop: false }`
[INFO] [stdout] a899010722ed43f3dc69e28fbda3112cb5fc34e28d09341726702c15d846ade1