[INFO] fetching crate hpo 0.12.0...
[INFO] testing hpo-0.12.0 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1
[INFO] extracting crate hpo 0.12.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate hpo 0.12.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate hpo 0.12.0
[INFO] tweaked toml for crates.io crate hpo 0.12.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate hpo 0.12.0 on toolchain b83b707f97d809763b7861afa7638871f3339a33
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hpo 0.12.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dedb6794c9caf62a6ffbb9222cd597736fb2a6d7f5581b596071020fcaca4007
[INFO] running `Command { std: "docker" "start" "-a" "dedb6794c9caf62a6ffbb9222cd597736fb2a6d7f5581b596071020fcaca4007", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dedb6794c9caf62a6ffbb9222cd597736fb2a6d7f5581b596071020fcaca4007", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dedb6794c9caf62a6ffbb9222cd597736fb2a6d7f5581b596071020fcaca4007", kill_on_drop: false }`
[INFO] [stdout] dedb6794c9caf62a6ffbb9222cd597736fb2a6d7f5581b596071020fcaca4007
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dbff64b4398f0e89f510061a1cb3c26597d417f8311ad3bc26827b30df0cef03
[INFO] running `Command { std: "docker" "start" "-a" "dbff64b4398f0e89f510061a1cb3c26597d417f8311ad3bc26827b30df0cef03", kill_on_drop: false }`
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression
[INFO] [stdout]    --> src/parser/binary.rs:137:13
[INFO] [stdout]     |
[INFO] [stdout] 137 |             (bytes.len() >= term_len),
[INFO] [stdout]     |             ^                       ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 137 -             (bytes.len() >= term_len),
[INFO] [stdout] 137 +             bytes.len() >= term_len,
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.48s
[INFO] running `Command { std: "docker" "inspect" "dbff64b4398f0e89f510061a1cb3c26597d417f8311ad3bc26827b30df0cef03", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dbff64b4398f0e89f510061a1cb3c26597d417f8311ad3bc26827b30df0cef03", kill_on_drop: false }`
[INFO] [stdout] dbff64b4398f0e89f510061a1cb3c26597d417f8311ad3bc26827b30df0cef03
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 55b43e1b8aaccd2f00e8375368aa1ecdf173fff4f94791b74a91d28ad2d01935
[INFO] running `Command { std: "docker" "start" "-a" "55b43e1b8aaccd2f00e8375368aa1ecdf173fff4f94791b74a91d28ad2d01935", kill_on_drop: false }`
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling os_str_bytes v6.6.1
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling time-macros v0.2.19
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling serde_json v1.0.139
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling colored v2.2.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling log v0.4.26
[INFO] [stderr]    Compiling oorandom v11.1.4
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression
[INFO] [stdout]    --> src/parser/binary.rs:137:13
[INFO] [stdout]     |
[INFO] [stdout] 137 |             (bytes.len() >= term_len),
[INFO] [stdout]     |             ^                       ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 137 -             (bytes.len() >= term_len),
[INFO] [stdout] 137 +             bytes.len() >= term_len,
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling time v0.3.37
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling simple_logger v4.3.3
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling criterion v0.4.0
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around `match` scrutinee expression
[INFO] [stdout]    --> src/parser/binary.rs:137:13
[INFO] [stdout]     |
[INFO] [stdout] 137 |             (bytes.len() >= term_len),
[INFO] [stdout]     |             ^                       ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 137 -             (bytes.len() >= term_len),
[INFO] [stdout] 137 +             bytes.len() >= term_len,
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 18.48s
[INFO] running `Command { std: "docker" "inspect" "55b43e1b8aaccd2f00e8375368aa1ecdf173fff4f94791b74a91d28ad2d01935", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "55b43e1b8aaccd2f00e8375368aa1ecdf173fff4f94791b74a91d28ad2d01935", kill_on_drop: false }`
[INFO] [stdout] 55b43e1b8aaccd2f00e8375368aa1ecdf173fff4f94791b74a91d28ad2d01935
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 98957fd6de312edfb6197085936438e3096137c3ff699e1b6c434104778e950b
[INFO] running `Command { std: "docker" "start" "-a" "98957fd6de312edfb6197085936438e3096137c3ff699e1b6c434104778e950b", kill_on_drop: false }`
[INFO] [stderr] warning: unnecessary parentheses around `match` scrutinee expression
[INFO] [stderr]    --> src/parser/binary.rs:137:13
[INFO] [stderr]     |
[INFO] [stderr] 137 |             (bytes.len() >= term_len),
[INFO] [stderr]     |             ^                       ^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]     |
[INFO] [stderr] 137 -             (bytes.len() >= term_len),
[INFO] [stderr] 137 +             bytes.len() >= term_len,
[INFO] [stderr]     |
[INFO] [stderr] 
[INFO] [stderr] warning: `hpo` (lib) generated 1 warning (run `cargo fix --lib -p hpo` to apply 1 suggestion)
[INFO] [stderr] warning: `hpo` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hpo-c1aa8057bd8ac04e)
[INFO] [stdout] 
[INFO] [stdout] running 84 tests
[INFO] [stdout] test annotations::gene::test::gene_to_and_from_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_to_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_long_name ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_non_utf8_name ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_wrong_length ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_non_utf8_name ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_binary ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_long_name ... ok
[INFO] [stdout] test matrix::tests::test_col_iterator_sums ... ok
[INFO] [stdout] test matrix::tests::test_column_index_iterator ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_wrong_length ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_and_from_binary ... ok
[INFO] [stdout] test matrix::tests::test_column_iterator ... ok
[INFO] [stdout] test matrix::tests::test_empty_row_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_index_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator_sums ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_omim ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_omim_id ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_comment ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_not ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_orpha_not ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_fails ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hashtag ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hpo_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_ncbi_gene ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_orpha ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_hpo_id ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_input ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_empty_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_id ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_build ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::min ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_max ... ok
[INFO] [stdout] test stats::test::iterate_counts ... ok
[INFO] [stdout] test stats::test::iterate_frequencies ... ok
[INFO] [stdout] test term::group::tests::test_bitand ... ok
[INFO] [stdout] test term::group::tests::test_bitand_2 ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_fcache ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set2 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set3 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set1 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set4 ... ok
[INFO] [stdout] test term::group::tests::test_hpogroup_iter ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_cdf ... ok
[INFO] [stdout] test term::hpoterm::test_categories::test_categories_is_self ... ok
[INFO] [stdout] test ontology::test::add_parents_from_bytes ... ok
[INFO] [stdout] test ontology::test::add_terms_from_bytes ... ok
[INFO] [stdout] test term::hpoterm::test_categories::test_modifier ... ok
[INFO] [stdout] test term::hpoterm::test_categories::test_categories ... ok
[INFO] [stdout] test ontology::test::diseases_by_name ... ok
[INFO] [stdout] test term::hpoterm::test_categories::test_modifier_is_self ... ok
[INFO] [stdout] test parser::hp_obo::test::split_terms ... ok
[INFO] [stdout] test term::internal::test::from_bytes ... ok
[INFO] [stdout] test term::internal::test::to_bytes ... ok
[INFO] [stdout] test term::internal::test::from_multiple_bytes ... ok
[INFO] [stdout] test utils::test::combinations ... ok
[INFO] [stdout] test utils::test::combinations_single ... ok
[INFO] [stdout] test utils::test::combinations_empty ... ok
[INFO] [stdout] test utils::test::combinations_two ... ok
[INFO] [stdout] test utils::test::combinations_with_none ... ok
[INFO] [stdout] test utils::test::last_row ... ok
[INFO] [stdout] test ontology::test::graphiv ... ok
[INFO] [stdout] test set::test::test ... ok
[INFO] [stdout] test term::hpoterm::test_path_to_term::normal ... ok
[INFO] [stdout] test term::hpoterm::test_path_to_term::child_term ... ok
[INFO] [stdout] test set::test::test_replace_obsolete ... ok
[INFO] [stdout] test term::hpoterm::test_path_to_term::same_term ... ok
[INFO] [stdout] test set::test::test_obsolete ... ok
[INFO] [stdout] test ontology::test::check_v2_parsing ... ok
[INFO] [stdout] test set::test::test_with_replaced_obsolete ... ok
[INFO] [stdout] test ontology::test::parse_hpo_version ... ok
[INFO] [stdout] test term::hpoterm::test_path_to_term::parent_term ... ok
[INFO] [stdout] test ontology::test::compare_v1_v2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 84 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.13s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests hpo
[INFO] [stderr] warning: unnecessary parentheses around `match` scrutinee expression
[INFO] [stderr]    --> src/parser/binary.rs:137:13
[INFO] [stderr]     |
[INFO] [stderr] 137 |             (bytes.len() >= term_len),
[INFO] [stderr]     |             ^                       ^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]     |
[INFO] [stderr] 137 -             (bytes.len() >= term_len),
[INFO] [stderr] 137 +             bytes.len() >= term_len,
[INFO] [stderr]     |
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stdout] 
[INFO] [stdout] running 142 tests
[INFO] [stdout] test src/matrix.rs - matrix (line 14) - compile ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::is_empty (line 87) ... ok
[INFO] [stdout] test src/lib.rs - (line 113) ... ok
[INFO] [stdout] test src/lib.rs - (line 143) ... ok
[INFO] [stdout] test src/annotations/disease.rs - annotations::disease::Disease::from_bytes (line 108) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology (line 112) - compile ... ok
[INFO] [stdout] test src/annotations/omim_disease.rs - annotations::omim_disease::OmimDisease::as_bytes (line 115) ... ok
[INFO] [stdout] test src/annotations/orpha_disease.rs - annotations::orpha_disease::OrphaDisease::try_from (line 123) ... ok
[INFO] [stdout] test src/lib.rs - (line 59) ... ok
[INFO] [stdout] test src/annotations/disease.rs - annotations::disease::Disease::as_bytes (line 52) ... ok
[INFO] [stdout] test src/annotations/omim_disease.rs - annotations::omim_disease::OmimDisease::try_from (line 191) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology (line 86) - compile ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::new (line 61) ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::cols (line 138) ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::len (line 74) ... ok
[INFO] [stdout] test src/annotations/gene.rs - annotations::gene::Gene::as_bytes (line 142) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::from_standard (line 261) - compile ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::from_standard_transitive (line 313) - compile ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::dim (line 100) ... ok
[INFO] [stdout] test src/annotations/gene.rs - annotations::gene::Gene::try_from (line 219) ... ok
[INFO] [stdout] test src/matrix.rs - matrix::Matrix<'a,T>::rows (line 113) ... ok
[INFO] [stdout] test src/lib.rs - (line 163) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::as_bytes (line 838) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology (line 38) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::gene_by_name (line 568) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::gene (line 547) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::is_empty (line 515) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::hpos (line 783) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::categories (line 804) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::compare (line 728) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::custom_information_content (line 1199) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::genes (line 587) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::hpo (line 530) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::hpos (line 770) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::from_binary (line 361) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::from_bytes (line 424) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::len (line 502) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::omim_disease_by_name (line 663) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::iter (line 751) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::omim_disease (line 604) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::omim_diseases_by_name (line 642) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::modifier (line 1109) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::omim_diseases (line 622) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<AllTerms>::add_parent (line 237) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<AllTerms>::connect_all_terms (line 345) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::orpha_diseases (line 700) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder (line 86) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<ConnectedTerms>::calculate_information_content (line 609) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<ConnectedTerms>::annotate_gene (line 433) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::orpha_disease (line 683) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<ConnectedTerms>::annotate_omim_disease (line 490) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<ConnectedTerms>::annotate_orpha_disease (line 548) ... ok
[INFO] [stdout] test src/ontology.rs - ontology::Ontology::sub_ontology (line 904) ... ok
[INFO] [stdout] test src/ontology/builder.rs - ontology::builder::Builder<LooseCollection>::new_term (line 189) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::is_empty (line 165) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::information_content (line 607) ... ok
[INFO] [stdout] test src/ontology/comparison.rs - ontology::comparison (line 5) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::categories (line 557) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet (line 29) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::child_nodes (line 101) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::len (line 142) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::gene_ids (line 461) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::contains (line 721) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::iter (line 693) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::omim_disease_ids (line 494) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::remove_modifier (line 184) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::new (line 75) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::orpha_disease_ids (line 527) ... ok
[INFO] [stdout] test src/similarity.rs - similarity (line 31) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::replace_obsolete (line 417) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::remove_obsolete (line 262) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::similarity (line 646) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::Builtins::new (line 480) ... ok
[INFO] [stdout] test src/similarity.rs - similarity (line 11) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::with_replaced_obsolete (line 363) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::without_modifier (line 214) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::GroupSimilarity (line 278) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::GraphIc::new (line 29) ... ok
[INFO] [stdout] test src/set.rs - set::HpoSet<'a>::without_obsolete (line 309) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Distance::new (line 288) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Lin::new (line 118) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Mutation::new (line 325) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::GroupSimilarity<T,C>::new (line 368) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Jc::new (line 172) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Resnik::new (line 82) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::Builtins (line 417) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::InformationCoefficient::new (line 256) ... ok
[INFO] [stdout] test src/similarity/defaults.rs - similarity::defaults::Relevance::new (line 219) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::GroupSimilarity (line 320) ... ok
[INFO] [stdout] test src/similarity.rs - similarity::Similarity (line 74) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_common_ancestor_ids (line 251) ... ok
[INFO] [stdout] test src/stats/hypergeom.rs - stats::hypergeom (line 45) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_common_ancestor_ids (line 270) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_common_ancestors (line 485) ... ok
[INFO] [stdout] test src/stats/linkage.rs - stats::linkage::Linkage (line 59) ... ok
[INFO] [stdout] test src/stats/hypergeom/gene.rs - stats::hypergeom::gene::gene_enrichment (line 12) ... ok
[INFO] [stdout] test src/stats/hypergeom/disease.rs - stats::hypergeom::disease::orpha_disease_enrichment (line 45) ... ok
[INFO] [stdout] test src/stats/hypergeom/disease.rs - stats::hypergeom::disease::omim_disease_enrichment (line 12) ... ok
[INFO] [stdout] test src/stats/linkage.rs - stats::linkage::Linkage<'a>::indicies (line 281) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_parent_ids (line 169) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_parents (line 185) ... ok
[INFO] [stdout] test src/stats/hypergeom.rs - stats::hypergeom (line 9) ... ok
[INFO] [stdout] test src/stats/linkage.rs - stats::linkage::Linkage<'a>::single (line 166) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_union_ancestor_ids (line 379) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_common_ancestors (line 465) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_union_ancestors (line 573) ... ok
[INFO] [stdout] test src/stats/linkage.rs - stats::linkage::Linkage<'a>::union (line 113) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_union_ancestor_ids (line 360) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::children_ids (line 204) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::children (line 220) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::common_ancestors (line 515) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::common_ancestor_ids (line 323) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::common_ancestor_ids (line 304) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::categories (line 1083) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::child_of (line 847) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::distance_to_ancestor (line 814) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::all_union_ancestors (line 593) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::id (line 100) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::distance_to_term (line 927) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::is_modifier (line 1052) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::orpha_diseases (line 738) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::information_content (line 774) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::name (line 118) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::path_to_term (line 955) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::parent_ids (line 134) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::parents (line 150) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::orpha_disease_ids (line 757) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::omim_diseases (line 703) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::common_ancestors (line 535) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::path_to_ancestor (line 885) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::try_new (line 55) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::gene_ids (line 687) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::omim_disease_ids (line 722) ... ok
[INFO] [stdout] test src/term/hpotermid.rs - term::hpotermid::HpoTermId::from_u32 (line 37) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::union_ancestor_ids (line 408) ... ok
[INFO] [stdout] test src/utils.rs - utils::Combinations (line 7) - compile ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::genes (line 669) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::parent_of (line 866) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::similarity_score (line 793) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::union_ancestor_ids (line 427) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::union_ancestors (line 643) ... ok
[INFO] [stdout] test src/term/hpoterm.rs - term::hpoterm::HpoTerm<'a>::union_ancestors (line 623) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 142 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 10.08s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "98957fd6de312edfb6197085936438e3096137c3ff699e1b6c434104778e950b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "98957fd6de312edfb6197085936438e3096137c3ff699e1b6c434104778e950b", kill_on_drop: false }`
[INFO] [stdout] 98957fd6de312edfb6197085936438e3096137c3ff699e1b6c434104778e950b