[INFO] fetching crate deepbiop-bam 0.1.15...
[INFO] testing deepbiop-bam-0.1.15 against try#b83b707f97d809763b7861afa7638871f3339a33 for pr-145838-1
[INFO] extracting crate deepbiop-bam 0.1.15 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate deepbiop-bam 0.1.15
[INFO] finished tweaking crates.io crate deepbiop-bam 0.1.15
[INFO] tweaked toml for crates.io crate deepbiop-bam 0.1.15 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-bam 0.1.15 on toolchain b83b707f97d809763b7861afa7638871f3339a33
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-bam 0.1.15 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c9ae46424a1474357d7556f76afd119fd8a88b28b72dfc91c97c3cf9bbbc1852
[INFO] running `Command { std: "docker" "start" "-a" "c9ae46424a1474357d7556f76afd119fd8a88b28b72dfc91c97c3cf9bbbc1852", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c9ae46424a1474357d7556f76afd119fd8a88b28b72dfc91c97c3cf9bbbc1852", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c9ae46424a1474357d7556f76afd119fd8a88b28b72dfc91c97c3cf9bbbc1852", kill_on_drop: false }`
[INFO] [stdout] c9ae46424a1474357d7556f76afd119fd8a88b28b72dfc91c97c3cf9bbbc1852
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e731b28540c74625e6dfa7dc84992355f3b6d35b899a1db45fe27322d7dd2899
[INFO] running `Command { std: "docker" "start" "-a" "e731b28540c74625e6dfa7dc84992355f3b6d35b899a1db45fe27322d7dd2899", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.169
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[INFO] [stderr]    Compiling noodles-bam v0.72.0
[INFO] [stderr]    Compiling numpy v0.23.0
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[INFO] [stderr]    Compiling noodles v0.87.0
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[INFO] [stderr]    Compiling deepbiop-utils v0.1.15
[INFO] [stderr]    Compiling deepbiop-core v0.1.15
[INFO] [stderr]    Compiling deepbiop-fq v0.1.15
[INFO] [stderr]    Compiling deepbiop-bam v0.1.15 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 08s
[INFO] running `Command { std: "docker" "inspect" "e731b28540c74625e6dfa7dc84992355f3b6d35b899a1db45fe27322d7dd2899", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e731b28540c74625e6dfa7dc84992355f3b6d35b899a1db45fe27322d7dd2899", kill_on_drop: false }`
[INFO] [stdout] e731b28540c74625e6dfa7dc84992355f3b6d35b899a1db45fe27322d7dd2899
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 983868f6d25a6cdee520c9763c2bd6fae4f51e67c88caa6e94039025ee3560f2
[INFO] running `Command { std: "docker" "start" "-a" "983868f6d25a6cdee520c9763c2bd6fae4f51e67c88caa6e94039025ee3560f2", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.9
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[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling noodles-core v0.15.0
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[INFO] [stderr]    Compiling noodles-sam v0.68.0
[INFO] [stderr]    Compiling pyo3-stub-gen v0.6.2
[INFO] [stderr]    Compiling noodles-bam v0.72.0
[INFO] [stderr]    Compiling noodles v0.87.0
[INFO] [stderr]    Compiling deepbiop-utils v0.1.15
[INFO] [stderr]    Compiling deepbiop-core v0.1.15
[INFO] [stderr]    Compiling deepbiop-fq v0.1.15
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling deepbiop-bam v0.1.15 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 42.37s
[INFO] running `Command { std: "docker" "inspect" "983868f6d25a6cdee520c9763c2bd6fae4f51e67c88caa6e94039025ee3560f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "983868f6d25a6cdee520c9763c2bd6fae4f51e67c88caa6e94039025ee3560f2", kill_on_drop: false }`
[INFO] [stdout] 983868f6d25a6cdee520c9763c2bd6fae4f51e67c88caa6e94039025ee3560f2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+b83b707f97d809763b7861afa7638871f3339a33" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0552636a1394b0f835b939a9b64167bd4bf376890e6f5ca71c17a95aeb554538
[INFO] running `Command { std: "docker" "start" "-a" "0552636a1394b0f835b939a9b64167bd4bf376890e6f5ca71c17a95aeb554538", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.49s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_bam-9a9edbcb92393ad4)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests deepbiop_bam
[INFO] [stdout] test chimeric::event::tests::test_create_chimeric_events_from_bam ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test src/chimeric/event.rs - chimeric::event::ChimericEvent::parse_list_pos (line 127) ... ok
[INFO] [stdout] test src/chimeric/event.rs - chimeric::event::ChimericEvent::from_str (line 165) ... ok
[INFO] [stdout] test src/chimeric/event.rs - chimeric::event::ChimericEvent::parse_sa_tag (line 50) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.94s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0552636a1394b0f835b939a9b64167bd4bf376890e6f5ca71c17a95aeb554538", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0552636a1394b0f835b939a9b64167bd4bf376890e6f5ca71c17a95aeb554538", kill_on_drop: false }`
[INFO] [stdout] 0552636a1394b0f835b939a9b64167bd4bf376890e6f5ca71c17a95aeb554538