[INFO] fetching crate sfs-cli 0.1.0...
[INFO] testing sfs-cli-0.1.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1
[INFO] extracting crate sfs-cli 0.1.0 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate sfs-cli 0.1.0
[INFO] finished tweaking crates.io crate sfs-cli 0.1.0
[INFO] tweaked toml for crates.io crate sfs-cli 0.1.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate sfs-cli 0.1.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate sfs-cli 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded trycmd v0.14.17
[INFO] [stderr]   Downloaded snapbox-macros v0.3.5
[INFO] [stderr]   Downloaded snapbox v0.4.12
[INFO] [stderr]   Downloaded noodles-core v0.12.0
[INFO] [stderr]   Downloaded noodles-tabix v0.26.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.22.0
[INFO] [stderr]   Downloaded noodles-bcf v0.32.0
[INFO] [stderr]   Downloaded noodles-csi v0.22.0
[INFO] [stderr]   Downloaded sfs-core v0.1.0
[INFO] [stderr]   Downloaded noodles-vcf v0.35.0
[INFO] [stderr]   Downloaded memchr v2.6.0
[INFO] [stderr]   Downloaded rustix v0.38.9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a663e1efceb7bff743da2820f3a88305f6f37be97d7da17cb520290a99affae5
[INFO] running `Command { std: "docker" "start" "-a" "a663e1efceb7bff743da2820f3a88305f6f37be97d7da17cb520290a99affae5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a663e1efceb7bff743da2820f3a88305f6f37be97d7da17cb520290a99affae5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a663e1efceb7bff743da2820f3a88305f6f37be97d7da17cb520290a99affae5", kill_on_drop: false }`
[INFO] [stdout] a663e1efceb7bff743da2820f3a88305f6f37be97d7da17cb520290a99affae5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e8424bf913c79dceb64ccaa90c66f94cdb7366aa5db9ef6ab2c0aedb6f4cbf90
[INFO] running `Command { std: "docker" "start" "-a" "e8424bf913c79dceb64ccaa90c66f94cdb7366aa5db9ef6ab2c0aedb6f4cbf90", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling hashbrown v0.14.0
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling memchr v2.6.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.1
[INFO] [stderr]    Compiling percent-encoding v2.3.0
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling anstyle-query v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.2
[INFO] [stderr]    Compiling syn v2.0.29
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]    Compiling clap_lex v0.5.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling anstream v0.5.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling indexmap v2.0.0
[INFO] [stderr]    Compiling clap_builder v4.4.0
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling env_logger v0.10.0
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling clap_derive v4.4.0
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling clap v4.4.0
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.65s
[INFO] running `Command { std: "docker" "inspect" "e8424bf913c79dceb64ccaa90c66f94cdb7366aa5db9ef6ab2c0aedb6f4cbf90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8424bf913c79dceb64ccaa90c66f94cdb7366aa5db9ef6ab2c0aedb6f4cbf90", kill_on_drop: false }`
[INFO] [stdout] e8424bf913c79dceb64ccaa90c66f94cdb7366aa5db9ef6ab2c0aedb6f4cbf90
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 272e108da185f02f7fec1fcad6b24a279cdebc69bda569d2f7a2763e34ec15f7
[INFO] running `Command { std: "docker" "start" "-a" "272e108da185f02f7fec1fcad6b24a279cdebc69bda569d2f7a2763e34ec15f7", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.188
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling serde_derive v1.0.188
[INFO] [stderr]    Compiling rustix v0.38.9
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.5
[INFO] [stderr]    Compiling fastrand v2.0.0
[INFO] [stderr]    Compiling walkdir v2.3.3
[INFO] [stderr]    Compiling snapbox-macros v0.3.5
[INFO] [stderr]    Compiling os_pipe v1.1.4
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling filetime v0.2.22
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling content_inspector v0.2.4
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling winnow v0.5.15
[INFO] [stderr]    Compiling dunce v1.0.4
[INFO] [stderr]    Compiling similar v2.2.1
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling either v1.9.0
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling rayon v1.7.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling tempfile v3.8.0
[INFO] [stderr]    Compiling snapbox v0.4.12
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling toml_datetime v0.6.3
[INFO] [stderr]    Compiling serde_spanned v0.6.3
[INFO] [stderr]    Compiling humantime-serde v1.1.1
[INFO] [stderr]    Compiling toml_edit v0.19.14
[INFO] [stderr]    Compiling trycmd v0.14.17
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 31.22s
[INFO] running `Command { std: "docker" "inspect" "272e108da185f02f7fec1fcad6b24a279cdebc69bda569d2f7a2763e34ec15f7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "272e108da185f02f7fec1fcad6b24a279cdebc69bda569d2f7a2763e34ec15f7", kill_on_drop: false }`
[INFO] [stdout] 272e108da185f02f7fec1fcad6b24a279cdebc69bda569d2f7a2763e34ec15f7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] a101dec004af0adc36e63e4b6ebcd7dc632d03f86bd2ab315bfb768189fd5e4c
[INFO] running `Command { std: "docker" "start" "-a" "a101dec004af0adc36e63e4b6ebcd7dc632d03f86bd2ab315bfb768189fd5e4c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sfs-582bfa32341546cf)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test create::tests::test_parse_samples ... ok
[INFO] [stdout] test create::tests::test_project_args_conflict ... ok
[INFO] [stdout] test create::tests::test_project_strict_conflict ... ok
[INFO] [stdout] test create::tests::test_samples_and_samples_file_conflict ... ok
[INFO] [stdout] test view::tests::test_marginalize_keep_and_remove_conflict ... ok
[INFO] [stdout] test tests::test_no_subcommand ... ok
[INFO] [stdout] test create::tests::test_project ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_tests.rs (/opt/rustwide/target/debug/deps/cli_tests-bf3251df1f58cc77)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stderr] Testing tests/view/convert_to_npy.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_from_npy.toml ... ok
[INFO] [stderr] Testing tests/stat/precision.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_keep_unordered.toml ... ok
[INFO] [stderr] Testing tests/create/empty.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_project.toml ... ok
[INFO] [stderr] Testing tests/stat/invalid_precision.toml ... ok
[INFO] [stderr] Testing tests/stat/f2_and_fst.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/simple_1d_all.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_all.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_1d_subset.toml ... ok
[INFO] [stderr] Testing tests/stat/heterozygosity.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_invalid_project.toml ... ok
[INFO] [stderr] Testing tests/stat/relatedness.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_remove.toml ... ok
[INFO] [stderr] Testing tests/create/missing_2d_project_subset.toml ... ok
[INFO] [stdout] test fold ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_dimension_error_project.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_gz_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/missing_3d_subset.toml ... ok
[INFO] [stderr] Testing tests/fold/fold.toml ... ok
[INFO] [stderr] Testing tests/fold/fold_from_npy_inf.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_all.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_single.toml ... ok
[INFO] [stderr] Testing tests/create/unknown.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project_individuals.toml ... ok
[INFO] [stdout] test view ... ok
[INFO] [stderr] Testing tests/create/large_4d_project_subset.toml ... ok
[INFO] [stdout] test create ... ok
[INFO] [stdout] test stat ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.21s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "a101dec004af0adc36e63e4b6ebcd7dc632d03f86bd2ab315bfb768189fd5e4c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a101dec004af0adc36e63e4b6ebcd7dc632d03f86bd2ab315bfb768189fd5e4c", kill_on_drop: false }`
[INFO] [stdout] a101dec004af0adc36e63e4b6ebcd7dc632d03f86bd2ab315bfb768189fd5e4c