[INFO] fetching crate rsabpoa 0.3.7... [INFO] testing rsabpoa-0.3.7 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate rsabpoa 0.3.7 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate rsabpoa 0.3.7 [INFO] finished tweaking crates.io crate rsabpoa 0.3.7 [INFO] tweaked toml for crates.io crate rsabpoa 0.3.7 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rsabpoa 0.3.7 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rsabpoa 0.3.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded gskits v0.13.2 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded zerocopy-derive v0.8.22 [INFO] [stderr] Downloaded bio v2.2.0 [INFO] [stderr] Downloaded zerocopy v0.8.22 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.4.2+3.4.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] be43d9e7ea57fe062802e2903f36aacd562c12234ae1c9703c9d1633b0b59746 [INFO] running `Command { std: "docker" "start" "-a" "be43d9e7ea57fe062802e2903f36aacd562c12234ae1c9703c9d1633b0b59746", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be43d9e7ea57fe062802e2903f36aacd562c12234ae1c9703c9d1633b0b59746", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be43d9e7ea57fe062802e2903f36aacd562c12234ae1c9703c9d1633b0b59746", kill_on_drop: false }` [INFO] [stdout] be43d9e7ea57fe062802e2903f36aacd562c12234ae1c9703c9d1633b0b59746 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7d3d3673ca7f4a3fd25763034a927ec918858f3f6f3462f421330e794d3f1aca [INFO] running `Command { std: "docker" "start" "-a" "7d3d3673ca7f4a3fd25763034a927ec918858f3f6f3462f421330e794d3f1aca", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.170 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling litemap v0.7.5 [INFO] [stderr] Compiling serde v1.0.218 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Compiling paste 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[stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.13.2 [INFO] [stdout] warning: type `__off_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:83:10 [INFO] [stdout] | [INFO] [stdout] 83 | pub type __off_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `OffT` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__off64_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:84:10 [INFO] [stdout] | [INFO] [stdout] 84 | pub type __off64_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `Off64T` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__m128i` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:85:10 [INFO] [stdout] | [INFO] [stdout] 85 | pub type __m128i = [::std::os::raw::c_longlong; 2usize]; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `M128i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `_IO_lock_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:102:10 [INFO] [stdout] | [INFO] [stdout] 102 | pub type _IO_lock_t = ::std::os::raw::c_void; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `IoLockT` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abpoa_msa1` [INFO] [stdout] --> src/abpoa.rs:7:81 [INFO] [stdout] | [INFO] [stdout] 7 | abpoa_generate_consensus, abpoa_generate_rc_msa, abpoa_init, abpoa_msa, abpoa_msa1, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:107:9 [INFO] [stdout] | [INFO] [stdout] 107 | pub _IO_read_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_ptr` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:108:9 [INFO] [stdout] | [INFO] [stdout] 108 | pub _IO_read_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:109:9 [INFO] [stdout] | [INFO] [stdout] 109 | pub _IO_read_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:110:9 [INFO] [stdout] | [INFO] [stdout] 110 | pub _IO_write_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:111:9 [INFO] [stdout] | [INFO] [stdout] 111 | pub _IO_write_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_ptr` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | pub _IO_write_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | pub _IO_buf_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:114:9 [INFO] [stdout] | [INFO] [stdout] 114 | pub _IO_buf_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:115:9 [INFO] [stdout] | [INFO] [stdout] 115 | pub _IO_save_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_backup_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:116:9 [INFO] [stdout] | [INFO] [stdout] 116 | pub _IO_backup_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_backup_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:117:9 [INFO] [stdout] | [INFO] [stdout] 117 | pub _IO_save_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `abpoa_consensus_dna`, `abpoa_free_para`, and `msa_with_adaptive_fwd_rev` [INFO] [stdout] --> src/bin/abpoa_consensus.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | abpoa::{abpoa_consensus_dna, abpoa_consensus_dna_core, msa_with_adaptive_fwd_rev, AbpoaParam}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 18 | abpoa_sys::{abpoa_free, abpoa_free_para, abpoa_init, abpoa_para_t, abpoa_t}, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcaIo57t/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librsabpoa-565af13069a78a51,libgskits-662593b098a018df,libnum_cpus-c773da69969dc613,libuuid-9490a48ae83ee5d1,libsha1_smol-4fed1055ba2d5f30,libchrono-66eaed42d5d638d4,libiana_time_zone-33839373f004bfb1,libindicatif-5aff816900477fa7,libportable_atomic-5a60ab32f8ae7862,libnumber_prefix-8479f39d71e80d3e,libconsole-ca16cb9aad66b5d7,libunicode_width-79cfce0a776a55d3,libonce_cell-5c42cc25c3567235,libbio-1a37be0d43da6c24,libstrum-cd0529b9bac5883b,libcsv-504cf8daace65f5a,libryu-0ea4bafc9bef6d8b,libitoa-6b76ec393d6a2c41,libcsv_core-658b80f8f2838c6a,libbytecount-d552d1ab3fdfccd4,libtriple_accel-5001fad5b3da9792,libeditdistancek-0346ad0312e0678a,libitertools_num-889d80010c6f9f8d,libenum_map-06e2857fea6cd88a,libstatrs-94469c56671d4774,libnalgebra-0d5e25aac6c6307b,librand_distr-6802100a9255384b,libnum_rational-b43d95108db4a0be,libtypenum-b636c2b461885073,libsimba-09406831545625bf,libwide-5ff30ab1b1255166,libsafe_arch-6ac2124103538b9d,libbytemuck-ce67f74446d9440a,librand-6b34b5a6e771c4f8,librand_chacha-fc54bbfc11932832,libppv_lite86-2c4bde192c746f0e,libzerocopy-1c577d46d1a183b8,librand_core-710b88f49b835441,libgetrandom-458157dbe1340db0,libcfg_if-33ef6c02a07f9fec,libordered_float-31b964d6386c3529,libndarray-7bef08b58e51f3ab,libmatrixmultiply-8cb1040452a1e8a1,libnum_complex-f69214cbf021e2f8,librawpointer-a726d041f28ef5ec,libmultimap-1acbaf3020841f9f,libitertools-3db4797dc23645d3,libeither-ef22a4c75605e12f,libanyhow-75a9af91c5a25be8,libnum_integer-6f51ea2b2b20264c,libbv-18df35b760211ddc,libvec_map-a2b281ff2a18bfcf,libserde-9286a253bce29c31,libbit_set-d347d12a7bf129f2,libbit_vec-d65fb98b7c3788f8,libfxhash-6ae122e7d9b05b12,libpetgraph-4273447e50243a8b,libindexmap-1dfdff4da4264c8c,libequivalent-7e0e8cbe6c474a67,libhashbrown-19954401a582c725,libfixedbitset-1d9e4d386551ec07,libapprox-6b2382e6d9f99839,libnum_traits-eb2c463b884281aa,librust_htslib-9a42eb8559eac70a,libthiserror-7065b01a824ae3da,libieee754-389556e2883b0bde,libhts_sys-4f299780d15e4150,liblzma_sys-fcec48cab637599a,libcurl_sys-d4e2cbbeecfc356e,libopenssl_sys-d384621e4955915b,liblibz_sys-4cde3e33eab0734f,liblibc-c074edd01b411a10,libbzip2_sys-5e825f35c20514be,liburl-70c1bc4c36e87ad3,libidna-40a25a9a5c80eb4a,libidna_adapter-523c47ef6e9ef9a1,libicu_normalizer-d5641d12e5098049,libicu_normalizer_data-924449c90d89dbe9,libwrite16-e3dc6fad88157cf5,libutf8_iter-0d9be7b316c2b184,libutf16_iter-d3264925eca367d9,libsmallvec-c045c8168691680a,libicu_properties-32bcff95665ad31e,libicu_properties_data-51b5eb2cadc91212,libicu_locid_transform-3d29f9a1cb2d0c48,libicu_locid_transform_data-ad15ccbe3fb30a0f,libicu_collections-d5dcba329d69d472,libicu_provider-16bd4f643202fbcd,libicu_locid-b24a1ee8a26f5590,liblitemap-705c4d2af7d10c57,libtinystr-9f5d4eed9176f872,libzerovec-49fa5d1683e90945,libwriteable-45c783735d88c2b0,libyoke-920559ee2585d217,libzerofrom-7472e6aa6e1e8d89,libstable_deref_trait-e5f295e98f1b80b2,libform_urlencoded-be943b51fff753cf,libpercent_encoding-8c980134d68585d5,libbio_types-3609a6bd99bbe284,libthiserror-f5378dbca2821840,libbyteorder-1efcbe4f07366651,libregex-ed00a127b8e728c6,libregex_automata-33e717a2ce96fbe4,libaho_corasick-50150a17a2667fa6,libmemchr-4f0714dc45d95749,libregex_syntax-13fc688ae7f36982,liblinear_map-4e56c30b106c3d59,liblazy_static-b3603208c0de2608,libnewtype_derive-e7c805e74218b45b,libcustom_derive-7dc5746d463a3d5a,libcrossbeam-5117d0df46155b04,libcrossbeam_deque-488eb1feabedb197,libcrossbeam_channel-61b2bc493124ae7b,libcrossbeam_queue-91b40bd8accda9df,libcrossbeam_epoch-60829f35ae95858e,libcrossbeam_utils-ae913342a5a98c57,libclap-c27734ee699977b0,libclap_builder-6341eef0c6d0e87c,libstrsim-24acdad2526b95b7,libanstream-3a5850ea78bcd0e3,libanstyle_query-f0be367a66cb0b02,libis_terminal_polyfill-c14c9d53c4f80a97,libcolorchoice-dfb6701820ae12a0,libanstyle_parse-80647c630cc5391e,libutf8parse-8828ddbb63eb8bad,libclap_lex-8f7e36dc12b04c16,libanstyle-df82d657645c4a5c}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lm" "-lz" "-lpthread" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcaIo57t/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/rsabpoa-e5076bf1de725280/out/abPOA-v1.5.3/lib" "-L" "/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-accd7884ace5423f/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-274020004fd6c289/out/build" "-L" "/opt/rustwide/target/debug/build/libz-sys-d69b3845dde883b2/out/lib" "-L" "/opt/rustwide/target/debug/build/openssl-sys-c7d1c49436975646/out/openssl-build/install/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-e2c1927024501577/out" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/abpoa_consensus-790515a1f85cee12" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: duplicate symbol: kvsprintf [INFO] [stdout] >>> defined at kstring.c:9 (src/kstring.c:9) [INFO] [stdout] >>> kstring.o:(kvsprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:143 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:143) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kvsprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: ksprintf [INFO] [stdout] >>> defined at kstring.c:28 (src/kstring.c:28) [INFO] [stdout] >>> kstring.o:(ksprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:178 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:178) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.ksprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: kstrtok [INFO] [stdout] >>> defined at kstring.c:38 (src/kstring.c:38) [INFO] [stdout] >>> kstring.o:(kstrtok) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:188 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:188) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kstrtok+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: ksplit_core [INFO] [stdout] >>> defined at kstring.c:66 (src/kstring.c:66) [INFO] [stdout] >>> kstring.o:(ksplit_core) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:225 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:225) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.ksplit_core+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: kgetline [INFO] [stdout] >>> defined at kstring.c:110 (src/kstring.c:110) [INFO] [stdout] >>> kstring.o:(kgetline) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:271 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:271) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kgetline+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: kmemmem [INFO] [stdout] >>> defined at kstring.c:177 (src/kstring.c:177) [INFO] [stdout] >>> kstring.o:(kmemmem) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:378 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:378) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kmemmem+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: kstrstr [INFO] [stdout] >>> defined at kstring.c:198 (src/kstring.c:198) [INFO] [stdout] >>> kstring.o:(kstrstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:400 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:400) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kstrstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: duplicate symbol: kstrnstr [INFO] [stdout] >>> defined at kstring.c:203 (src/kstring.c:203) [INFO] [stdout] >>> kstring.o:(kstrnstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-565af13069a78a51.rlib [INFO] [stdout] >>> defined at kstring.c:405 (/opt/rustwide/target/debug/build/hts-sys-5576802fbfc4e9a0/out/htslib/kstring.c:405) [INFO] [stdout] >>> 6d12ec76d75641d9-kstring.o:(.text.kstrnstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-4f299780d15e4150.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rsabpoa` (bin "abpoa_consensus") due to 1 previous error; 1 warning emitted [INFO] running `Command { std: "docker" "inspect" "7d3d3673ca7f4a3fd25763034a927ec918858f3f6f3462f421330e794d3f1aca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d3d3673ca7f4a3fd25763034a927ec918858f3f6f3462f421330e794d3f1aca", kill_on_drop: false }` [INFO] [stdout] 7d3d3673ca7f4a3fd25763034a927ec918858f3f6f3462f421330e794d3f1aca