[INFO] fetching crate rdk-sys 0.1.1... [INFO] testing rdk-sys-0.1.1 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate rdk-sys 0.1.1 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate rdk-sys 0.1.1 [INFO] finished tweaking crates.io crate rdk-sys 0.1.1 [INFO] tweaked toml for crates.io crate rdk-sys 0.1.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rdk-sys 0.1.1 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 69 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (available: v0.11.8) [INFO] [stderr] Adding which v4.4.2 (available: v8.0.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f87cbb1a5c8eb197c140a72a72f697fbe8ea7cba9bca72b796648b6e7fa121ab [INFO] running `Command { std: "docker" "start" "-a" "f87cbb1a5c8eb197c140a72a72f697fbe8ea7cba9bca72b796648b6e7fa121ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f87cbb1a5c8eb197c140a72a72f697fbe8ea7cba9bca72b796648b6e7fa121ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f87cbb1a5c8eb197c140a72a72f697fbe8ea7cba9bca72b796648b6e7fa121ab", kill_on_drop: false }` [INFO] [stdout] f87cbb1a5c8eb197c140a72a72f697fbe8ea7cba9bca72b796648b6e7fa121ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0e718f4cfc3d922f59f37c1d0c891cb0f45ed44f434e85432f8042d63dff81f1 [INFO] running `Command { std: "docker" "start" "-a" "0e718f4cfc3d922f59f37c1d0c891cb0f45ed44f434e85432f8042d63dff81f1", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling link-cplusplus v1.0.10 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling scratch v1.0.9 [INFO] [stderr] Compiling bitflags v2.9.3 [INFO] [stderr] Compiling cxxbridge-flags v1.0.173 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling cxx v1.0.173 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling codespan-reporting v0.12.0 [INFO] [stderr] Compiling indexmap v2.11.0 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cxx-build v1.0.173 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling cxxbridge-macro v1.0.173 [INFO] [stderr] Compiling rdk-sys v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: rdk-sys@0.1.1: In file included from /opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] warning: rdk-sys@0.1.1: /opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdk-sys@0.1.1: 4 | #include [INFO] [stderr] warning: rdk-sys@0.1.1: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdk-sys@0.1.1: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `rdk-sys v0.1.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdk-sys-6b7cebd2789bbcee/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/bindings/atom.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/inchi.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/ro_mol.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/substruct_match.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/mol_standardize.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/descriptors.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/rw_mol.rs [INFO] [stderr] cargo:rerun-if-changed=src/bindings/fingerprint.rs [INFO] [stderr] cargo:CXXBRIDGE_PREFIX=rdk-sys [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/crate [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/crate [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: command did not execute successfully (status code exit status: 1): LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/workdir" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/92a6de7413dda152-atom.rs.o" "-c" "/opt/rustwide/target/debug/build/rdk-sys-f93bbaf401fb8511/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc" [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "0e718f4cfc3d922f59f37c1d0c891cb0f45ed44f434e85432f8042d63dff81f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e718f4cfc3d922f59f37c1d0c891cb0f45ed44f434e85432f8042d63dff81f1", kill_on_drop: false }` [INFO] [stdout] 0e718f4cfc3d922f59f37c1d0c891cb0f45ed44f434e85432f8042d63dff81f1