[INFO] fetching crate pombase-gocam 0.91.0... [INFO] testing pombase-gocam-0.91.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate pombase-gocam 0.91.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate pombase-gocam 0.91.0 [INFO] finished tweaking crates.io crate pombase-gocam 0.91.0 [INFO] tweaked toml for crates.io crate pombase-gocam 0.91.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate pombase-gocam 0.91.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate pombase-gocam 0.91.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f5f667b3f1fe77627b7053a001ff2b7056c2729c068e9a0b59af6da4e9d7aa40 [INFO] running `Command { std: "docker" "start" "-a" "f5f667b3f1fe77627b7053a001ff2b7056c2729c068e9a0b59af6da4e9d7aa40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f5f667b3f1fe77627b7053a001ff2b7056c2729c068e9a0b59af6da4e9d7aa40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f5f667b3f1fe77627b7053a001ff2b7056c2729c068e9a0b59af6da4e9d7aa40", kill_on_drop: false }` [INFO] [stdout] f5f667b3f1fe77627b7053a001ff2b7056c2729c068e9a0b59af6da4e9d7aa40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 691e832c7ff44eaabe54bd82e4b8cb451b4924f205cde9b2e9ad5aca0d35fc78 [INFO] running `Command { std: "docker" "start" "-a" "691e832c7ff44eaabe54bd82e4b8cb451b4924f205cde9b2e9ad5aca0d35fc78", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling pombase-gocam v0.91.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.79s [INFO] running `Command { std: "docker" "inspect" "691e832c7ff44eaabe54bd82e4b8cb451b4924f205cde9b2e9ad5aca0d35fc78", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "691e832c7ff44eaabe54bd82e4b8cb451b4924f205cde9b2e9ad5aca0d35fc78", kill_on_drop: false }` [INFO] [stdout] 691e832c7ff44eaabe54bd82e4b8cb451b4924f205cde9b2e9ad5aca0d35fc78 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] eae042d2ecb409dfe696f6b20ec9ffffbe48029013811eb407acb8d943be4219 [INFO] running `Command { std: "docker" "start" "-a" "eae042d2ecb409dfe696f6b20ec9ffffbe48029013811eb407acb8d943be4219", kill_on_drop: false }` [INFO] [stderr] Compiling pombase-gocam v0.91.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.61s [INFO] running `Command { std: "docker" "inspect" "eae042d2ecb409dfe696f6b20ec9ffffbe48029013811eb407acb8d943be4219", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eae042d2ecb409dfe696f6b20ec9ffffbe48029013811eb407acb8d943be4219", kill_on_drop: false }` [INFO] [stdout] eae042d2ecb409dfe696f6b20ec9ffffbe48029013811eb407acb8d943be4219 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5a652fd8b3e710c9b78922c35f4867ea58486c7744c05634530c71be3f13a29f [INFO] running `Command { std: "docker" "start" "-a" "5a652fd8b3e710c9b78922c35f4867ea58486c7744c05634530c71be3f13a29f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pombase_gocam-4825e0de5f15781e) [INFO] [stdout] running 20 tests [INFO] [stdout] test graph::tests::parse_raw_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test ... ok [INFO] [stdout] test tests::retain_largest_subgraph_test ... ok [INFO] [stdout] test gocam_py::tests::parse_test ... ok [INFO] [stdout] test tests::retain_enabling_genes_test ... ok [INFO] [stdout] test tests::test_genes_in_model ... ok [INFO] [stdout] test tests::test_node_rel_direction ... ok [INFO] [stdout] test tests::test_genes_enabling_activities ... ok [INFO] [stdout] test tests::test_modified_genes_in_model ... ok [INFO] [stdout] test tests::parse_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test_with_complement ... ok [INFO] [stdout] test tests::remove_chemicals_inputs_outputs_only_test ... ok [INFO] [stdout] test tests::model_activity_enabled_by_test ... ok [INFO] [stdout] test tests::remove_chemicals_test ... ok [INFO] [stdout] test tests::merge_test ... ok [INFO] [stdout] test tests::merge_test_three_models ... ok [INFO] [stdout] test tests::find_overlaps_test ... ok [INFO] [stdout] test tests::overlap_test ... ok [INFO] [stdout] test tests::merge_test_mss51 ... ok [INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s [INFO] [stdout] [INFO] [stderr] Doc-tests pombase_gocam [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test src/raw.rs - raw::gocam_parse_raw (line 445) ... ok [INFO] [stdout] test src/raw.rs - raw (line 8) ... ok [INFO] [stdout] test src/lib.rs - parse_gocam_model (line 1945) ... ok [INFO] [stdout] test src/raw.rs - raw::GoCamRawModel (line 289) ... ok [INFO] [stdout] test src/lib.rs - GoCamModel::new (line 212) ... ok [INFO] [stdout] test src/lib.rs - (line 17) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5a652fd8b3e710c9b78922c35f4867ea58486c7744c05634530c71be3f13a29f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5a652fd8b3e710c9b78922c35f4867ea58486c7744c05634530c71be3f13a29f", kill_on_drop: false }` [INFO] [stdout] 5a652fd8b3e710c9b78922c35f4867ea58486c7744c05634530c71be3f13a29f