[INFO] fetching crate perbase 1.1.0... [INFO] testing perbase-1.1.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate perbase 1.1.0 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate perbase 1.1.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate perbase 1.1.0 [INFO] tweaked toml for crates.io crate perbase 1.1.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate perbase 1.1.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate perbase 1.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded rust-lapper v1.1.0 [INFO] [stderr] Downloaded libdeflater v0.7.5 [INFO] [stderr] Downloaded rust-htslib v0.39.5 [INFO] [stderr] Downloaded rstest v0.11.0 [INFO] [stderr] Downloaded libdeflate-sys v0.7.5 [INFO] [stderr] Downloaded openssl-src v300.1.5+3.1.3 [INFO] [stderr] Downloaded grep-cli v0.1.9 [INFO] [stderr] Downloaded bio v0.41.0 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] [stderr] Downloaded gzp v0.10.1 [INFO] [stderr] Downloaded curl-sys v0.4.67+curl-8.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 220b1f5affb699e0142da17d8382c74eee22864d2307ddfba1ebbb34c630d7a2 [INFO] running `Command { std: "docker" "start" "-a" "220b1f5affb699e0142da17d8382c74eee22864d2307ddfba1ebbb34c630d7a2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "220b1f5affb699e0142da17d8382c74eee22864d2307ddfba1ebbb34c630d7a2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "220b1f5affb699e0142da17d8382c74eee22864d2307ddfba1ebbb34c630d7a2", kill_on_drop: false }` [INFO] [stdout] 220b1f5affb699e0142da17d8382c74eee22864d2307ddfba1ebbb34c630d7a2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 72e8f45900d9d9f986cde909a4b9c22ef54524a8ecf6cfb8b049a69c044dbff5 [INFO] running `Command { std: "docker" "start" "-a" "72e8f45900d9d9f986cde909a4b9c22ef54524a8ecf6cfb8b049a69c044dbff5", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.149 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling pkg-config v0.3.27 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling regex-syntax v0.8.0 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling thiserror v1.0.49 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling tinyvec_macros v0.1.1 [INFO] [stderr] Compiling unicode-segmentation v1.10.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling lock_api v0.4.10 [INFO] [stderr] Compiling syn v2.0.38 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling jobserver v0.1.27 [INFO] [stderr] Compiling getrandom v0.2.10 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling tinyvec v1.6.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling futures-core v0.3.28 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling crossbeam-queue v0.3.8 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling unicode-bidi v0.3.13 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling anyhow v1.0.75 [INFO] [stderr] Compiling hashbrown v0.14.1 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling rayon-core v1.12.0 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling openssl-src v300.1.5+3.1.3 [INFO] [stderr] Compiling unicode-normalization v0.1.22 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling indexmap v2.0.2 [INFO] [stderr] Compiling form_urlencoded v1.2.0 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling regex-automata v0.4.1 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling idna v0.4.0 [INFO] [stderr] Compiling smartstring v1.0.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling itoa v1.0.9 [INFO] [stderr] Compiling ryu v1.0.15 [INFO] [stderr] Compiling termcolor v1.3.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling libz-sys v1.1.12 [INFO] [stderr] Compiling openssl-sys v0.9.93 [INFO] [stderr] Compiling curl-sys v0.4.67+curl-8.3.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling futures-sink v0.3.28 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling url v2.4.1 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling core_affinity v0.5.10 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling strum v0.23.0 [INFO] [stderr] Compiling bytes v1.5.0 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling bytecount v0.6.4 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling crossbeam v0.8.2 [INFO] [stderr] Compiling rayon v1.8.0 [INFO] [stderr] Compiling rust-lapper v1.1.0 [INFO] [stderr] Compiling lru_time_cache v0.11.11 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling serde_derive v1.0.188 [INFO] [stderr] Compiling thiserror-impl v1.0.49 [INFO] [stderr] Compiling pin-project-internal v1.1.3 [INFO] [stderr] Compiling regex v1.10.0 [INFO] [stderr] Compiling strum_macros v0.25.2 [INFO] [stderr] Compiling bstr v1.7.0 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling strum_macros v0.27.1 [INFO] [stderr] Compiling env_logger v0.9.3 [INFO] [stderr] Compiling globset v0.4.13 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling grep-cli v0.1.9 [INFO] [stderr] Compiling pin-project v1.1.3 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling strum v0.27.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling structopt v0.3.26 [INFO] [stderr] Compiling flate2 v1.0.27 [INFO] [stderr] Compiling gzp v0.10.1 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling bio v0.41.0 [INFO] [stderr] Compiling rust-htslib v0.39.5 [INFO] [stderr] Compiling perbase v1.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 33s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "72e8f45900d9d9f986cde909a4b9c22ef54524a8ecf6cfb8b049a69c044dbff5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72e8f45900d9d9f986cde909a4b9c22ef54524a8ecf6cfb8b049a69c044dbff5", kill_on_drop: false }` [INFO] [stdout] 72e8f45900d9d9f986cde909a4b9c22ef54524a8ecf6cfb8b049a69c044dbff5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4b49ad3d5cd486ed559a25830c7cda56678d45ea48eb5726240a207e069633ed [INFO] running `Command { std: "docker" "start" "-a" "4b49ad3d5cd486ed559a25830c7cda56678d45ea48eb5726240a207e069633ed", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling semver v1.0.20 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustix v0.38.18 [INFO] [stderr] Compiling bitflags v2.4.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.10 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling fastrand v2.0.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling rand_xorshift v0.3.0 [INFO] [stderr] Compiling regex-syntax v0.7.5 [INFO] [stderr] Compiling unarray v0.1.4 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Compiling rstest v0.11.0 [INFO] [stderr] Compiling tempfile v3.8.0 [INFO] [stderr] Compiling rusty-fork v0.3.0 [INFO] [stderr] Compiling proptest v1.3.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling structopt v0.3.26 [INFO] [stderr] Compiling rust-htslib v0.39.5 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling bio v0.41.0 [INFO] [stderr] Compiling perbase v1.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 35.73s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, rstest v0.11.0 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3` [INFO] running `Command { std: "docker" "inspect" "4b49ad3d5cd486ed559a25830c7cda56678d45ea48eb5726240a207e069633ed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4b49ad3d5cd486ed559a25830c7cda56678d45ea48eb5726240a207e069633ed", kill_on_drop: false }` [INFO] [stdout] 4b49ad3d5cd486ed559a25830c7cda56678d45ea48eb5726240a207e069633ed [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] df6293e835132be947836895529c8752a9a5a28ca3e3c65b3ca047e798ec26c9 [INFO] running `Command { std: "docker" "start" "-a" "df6293e835132be947836895529c8752a9a5a28ca3e3c65b3ca047e798ec26c9", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, rstest v0.11.0 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3` [INFO] [stderr] Running unittests src/lib/mod.rs (/opt/rustwide/target/debug/deps/perbase_lib-4bdb31da3b2fc0e4) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test position::mate_fix::tests::test_base_either_or_default_to_n ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_either_or_identical ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_from_char ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_either_or_iupac ... ok [INFO] [stdout] test position::mate_fix::tests::test_mate_resolution_construction ... ok [INFO] [stdout] test position::pileup_position::tests::test_from_pileup_mate_aware_chooses_first_mate ... ok [INFO] [stdout] test position::mate_fix::tests::test_map_qual_base_qual_n ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_qual_map_qual_iupac ... ok [INFO] [stdout] test position::pileup_position::tests::test_mate_resolution_strategies ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_qual_map_qual_first_in_pair ... ok [INFO] [stdout] test position::mate_fix::tests::test_base_qual_map_qual_n ... ok [INFO] [stdout] test position::pileup_position::tests::test_iupac_base_resolution ... ok [INFO] [stdout] test position::mate_fix::tests::test_map_qual_base_qual_iupac ... ok [INFO] [stdout] test position::mate_fix::tests::test_n_strategy ... ok [INFO] [stdout] test position::mate_fix::tests::test_original_strategy ... ok [INFO] [stdout] test position::mate_fix::tests::test_iupac_strategy ... ok [INFO] [stdout] test position::pileup_position::tests::test_n_strategy ... ok [INFO] [stdout] test position::mate_fix::tests::test_map_qual_base_qual_first_in_pair ... ok [INFO] [stdout] test par_granges::test::interval_set ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 15.75s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 98 tests [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/perbase-ec1f0f37a544b8aa) [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_7_mate_unaware_keep_zeros ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_8_mate_aware_keep_zeros ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_3_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_6_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_4_mate_aware_bq ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_5_mate_unaware_bq ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_fast::case_1_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_1::mate_fix_2 ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_vanilla::case_2_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_fast::case_2_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_1::mate_fix_1 ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_2::mate_fix_2 ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_vanilla::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_2::mate_fix_1 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 98 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.54s [INFO] [stdout] [INFO] [stderr] Doc-tests perbase_lib [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib/mod.rs - (line 13) - compile ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "df6293e835132be947836895529c8752a9a5a28ca3e3c65b3ca047e798ec26c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "df6293e835132be947836895529c8752a9a5a28ca3e3c65b3ca047e798ec26c9", kill_on_drop: false }` [INFO] [stdout] df6293e835132be947836895529c8752a9a5a28ca3e3c65b3ca047e798ec26c9