[INFO] fetching crate noodles-cram 0.86.0... [INFO] testing noodles-cram-0.86.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate noodles-cram 0.86.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate noodles-cram 0.86.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate noodles-cram 0.86.0 [INFO] tweaked toml for crates.io crate noodles-cram 0.86.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate noodles-cram 0.86.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate noodles-cram 0.86.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded compression-codecs v0.4.28 [INFO] [stderr] Downloaded compression-core v0.4.28 [INFO] [stderr] Downloaded noodles-fasta v0.56.0 [INFO] [stderr] Downloaded noodles-bgzf v0.43.0 [INFO] [stderr] Downloaded noodles-csi v0.51.0 [INFO] [stderr] Downloaded async-compression v0.4.28 [INFO] [stderr] Downloaded noodles-bam v0.83.0 [INFO] [stderr] Downloaded noodles-sam v0.79.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b6a723354338f6d95d6c52f4a99d44827da3aefa564048f73910ae4a607b5198 [INFO] running `Command { std: "docker" "start" "-a" "b6a723354338f6d95d6c52f4a99d44827da3aefa564048f73910ae4a607b5198", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b6a723354338f6d95d6c52f4a99d44827da3aefa564048f73910ae4a607b5198", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b6a723354338f6d95d6c52f4a99d44827da3aefa564048f73910ae4a607b5198", kill_on_drop: false }` [INFO] [stdout] b6a723354338f6d95d6c52f4a99d44827da3aefa564048f73910ae4a607b5198 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8022c4860148415d9f5c5789add4a71b902c1a47597e8a8d8f4a1e2fac7623b7 [INFO] running `Command { std: "docker" "start" "-a" "8022c4860148415d9f5c5789add4a71b902c1a47597e8a8d8f4a1e2fac7623b7", kill_on_drop: false }` [INFO] [stderr] Compiling lexical-util v1.0.6 [INFO] [stderr] Compiling zlib-rs v0.5.1 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling libbz2-rs-sys v0.2.2 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling lexical-parse-integer v1.0.5 [INFO] [stderr] Compiling lexical-write-integer v1.0.5 [INFO] [stderr] Compiling lexical-parse-float v1.0.5 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling bzip2 v0.6.0 [INFO] [stderr] Compiling lexical-write-float v1.0.5 [INFO] [stderr] Compiling lexical-core v1.0.5 [INFO] [stderr] Compiling libz-rs-sys v0.5.1 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling noodles-sam v0.79.0 [INFO] [stderr] Compiling noodles-bam v0.83.0 [INFO] [stderr] Compiling noodles-cram v0.86.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 23.30s [INFO] running `Command { std: "docker" "inspect" "8022c4860148415d9f5c5789add4a71b902c1a47597e8a8d8f4a1e2fac7623b7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8022c4860148415d9f5c5789add4a71b902c1a47597e8a8d8f4a1e2fac7623b7", kill_on_drop: false }` [INFO] [stdout] 8022c4860148415d9f5c5789add4a71b902c1a47597e8a8d8f4a1e2fac7623b7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a236c7c13fd1431020d8919c9d87cbb364fb163b03f3c009902a51c7b51ea7c [INFO] running `Command { std: "docker" "start" "-a" "0a236c7c13fd1431020d8919c9d87cbb364fb163b03f3c009902a51c7b51ea7c", kill_on_drop: false }` [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling tokio-macros v2.5.0 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling tokio v1.47.1 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling tokio-util v0.7.16 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling noodles-sam v0.79.0 [INFO] [stderr] Compiling noodles-bam v0.83.0 [INFO] [stderr] Compiling noodles-cram v0.86.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 33.95s [INFO] running `Command { std: "docker" "inspect" "0a236c7c13fd1431020d8919c9d87cbb364fb163b03f3c009902a51c7b51ea7c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a236c7c13fd1431020d8919c9d87cbb364fb163b03f3c009902a51c7b51ea7c", kill_on_drop: false }` [INFO] [stdout] 0a236c7c13fd1431020d8919c9d87cbb364fb163b03f3c009902a51c7b51ea7c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 71f65a6f4acb8f3aee759714500b58818cfba326426472ea6a8c4f2d18e58484 [INFO] running `Command { std: "docker" "start" "-a" "71f65a6f4acb8f3aee759714500b58818cfba326426472ea6a8c4f2d18e58484", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_cram-83fc508a0ed9e528) [INFO] [stdout] [INFO] [stdout] running 168 tests [INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_1 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_0 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_0 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_ext ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_1 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_stripe ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_uncompressed ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_stripe ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_1 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_pack ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_0 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_1 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_bit_packing_with_6_symbols ... ok [INFO] [stdout] test codecs::fqzcomp::decode::tests::test_reverse_qualities ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_cat ... ok [INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode_with_arithmetic_coder ... ok [INFO] [stdout] test codecs::rans_4x8::decode::header::tests::test_read_header ... ok [INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::decode::header::tests::test_read_order ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_read_header ... ok [INFO] [stdout] test codecs::rans_4x8::encode::header::tests::test_write_header ... ok [INFO] [stdout] test codecs::name_tokenizer::tests::test_self ... ok [INFO] [stdout] test codecs::rans_4x8::encode::header::tests::test_write_order ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_build_raw_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_encode ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_raw_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_normalize_frequencies ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_encode ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_normalize_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_split_chunks ... ok [INFO] [stdout] test codecs::rans_4x8::tests::test_self_0 ... ok [INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_1 ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_bit_packing_with_6_symbols ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_0 ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_rle ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_stripe ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_uncompressed ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_0 ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_1 ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_pack ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_rle ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_stripe ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_uncompressed ... ok [INFO] [stdout] test container::block::compression_method::tests::test_default ... ok [INFO] [stdout] test codecs::fqzcomp::decode::tests::test_decode ... ok [INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::data_series_encodings::data_series::tests::test_from_data_series_for_u8_array ... ok [INFO] [stdout] test container::compression_header::data_series_encodings::data_series::tests::test_try_from_byte_array_for_data_series ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_decode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte_array::tests::test_decode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte_array::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::integer::tests::test_decode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_decode_take ... ok [INFO] [stdout] test container::compression_header::encoding::codec::integer::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::preservation_map::key::tests::test_from_key_for_u8_array ... ok [INFO] [stdout] test container::compression_header::preservation_map::key::tests::test_try_from_u8_array_for_key ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::base::tests::test_from_base_for_u8 ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::tests::test_find ... ok [INFO] [stdout] test container::compression_header::preservation_map::tag_sets::key::tests::test_from_key_for_block_content_id ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_alignment_span ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_update ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_try_from_i32_i32_i32_for_reference_sequence_context ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_1 ... ok [INFO] [stdout] test crai::io::reader::tests::test_read_index ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::base::tests::test_try_from_u8_for_base ... ok [INFO] [stdout] test crai::io::writer::tests::test_write_record ... ok [INFO] [stdout] test crai::record::tests::test_fmt ... ok [INFO] [stdout] test crai::record::tests::test_from_str ... ok [INFO] [stdout] test crai::record::tests::test_from_str_with_invalid_records ... ok [INFO] [stdout] test file_definition::tests::test_default ... ok [INFO] [stdout] test huffman::tests::test_decode ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32 ... ok [INFO] [stdout] test huffman::tests::test_build_canonical_code_book ... ok [INFO] [stdout] test io::bit_reader::tests::test_read_u32 ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_0_len ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_length_greater_than_32_bits ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::reader::container::block::compression_method::tests::test_decode ... ok [INFO] [stdout] test io::reader::container::block::compression_method::tests::test_get_compression_method ... ok [INFO] [stdout] test io::reader::container::block::content_type::tests::test_decode ... ok [INFO] [stdout] test file_definition::version::tests::test_default ... ok [INFO] [stdout] test io::reader::container::block::content_type::tests::test_read_content_type ... ok [INFO] [stdout] test io::reader::container::block::tests::test_read_block ... ok [INFO] [stdout] test io::reader::container::block::tests::test_read_block_with_empty_block ... ok [INFO] [stdout] test io::reader::container::compression_header::data_series_encodings::tests::test_read_data_series_encodings ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_beta_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_byte_array_stop_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_external_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_golomb_rice_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_golomb_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_huffman_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_kind ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_subexp_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::substitution_matrix::tests::test_read_substitution_matrix ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tag_sets::tests::test_decode_type ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_bool ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map_with_no_substitution_matrix ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map_with_no_tag_ids_dictionary ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_byte_array_length_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_gamma_codec ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header_with_a_checksum_mismatch ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header_with_eof ... ok [INFO] [stdout] test io::reader::container::slice::header::tests::test_read_header_inner ... ok [INFO] [stdout] test io::reader::container::slice::tests::test_calculate_template_length ... ok [INFO] [stdout] test io::reader::container::slice::tests::test_resolve_mates ... ok [INFO] [stdout] test io::reader::header::container::sam_header::tests::test_read_with_trailing_nul_padding ... ok [INFO] [stdout] test io::reader::header::file_id::tests::test_read_file_id ... ok [INFO] [stdout] test io::reader::header::format_version::tests::test_read_format_version ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test io::reader::num::itf8::tests::test_read_itf8 ... ok [INFO] [stdout] test io::reader::num::ltf8::tests::test_read_ltf8 ... ok [INFO] [stdout] test io::reader::num::vlq::tests::test_read_uint7 ... ok [INFO] [stdout] test io::writer::builder::tests::test_uses_cram_3_1_codecs ... ok [INFO] [stdout] test io::writer::container::block::compression_method::tests::test_encode ... ok [INFO] [stdout] test io::writer::container::block::compression_method::tests::test_write_compression_method ... ok [INFO] [stdout] test io::writer::container::block::content_type::tests::test_encode ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::container::block::content_type::tests::test_write_content_type ... ok [INFO] [stdout] test io::reader::header::tests::test_read_file_definition ... ok [INFO] [stdout] test io::writer::container::block::tests::test_itf8_size_of ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_beta_codec ... ok [INFO] [stdout] test io::writer::container::block::tests::test_write_block ... ok [INFO] [stdout] test io::writer::container::compression_header::data_series_encodings::tests::test_data_series_encodings_len ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_byte_array_length_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_byte_array_stop_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_external_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_gamma_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_golomb_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_subexp_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_golomb_rice_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_huffman_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::tests::test_encode ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_from_frequencies_for_substitution_matrix ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_hit ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_row ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::tag_sets::tests::test_write_tag_sets ... ok [INFO] [stdout] test io::writer::header::container::tests::test_validate_reference_sequences ... ok [INFO] [stdout] test io::writer::header::magic_number::tests::test_write_magic_number ... ok [INFO] [stdout] test io::writer::header::tests::test_add_missing_reference_sequence_checksums ... ok [INFO] [stdout] test io::writer::num::itf8::tests::test_write_itf8 ... ok [INFO] [stdout] test io::writer::num::ltf8::tests::test_write_ltf8 ... ok [INFO] [stdout] test io::writer::record::convert::tests::test_cigar_to_features ... ok [INFO] [stdout] test io::writer::record::convert::tests::test_cigar_to_features_with_quality_scores_stored_as_array ... ok [INFO] [stdout] test record::cigar::iter::tests::test_next ... ok [INFO] [stdout] test record::data::iter::tests::test_size_hint ... ok [INFO] [stdout] test io::writer::num::vlq::tests::test_write_uint7 ... ok [INFO] [stdout] test record::feature::code::tests::test_from_code_for_u8 ... ok [INFO] [stdout] test io::writer::header::file_id::tests::test_write_file_id ... ok [INFO] [stdout] test record::feature::tests::test_position ... ok [INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode_with_do_len ... ok [INFO] [stdout] test record::feature::code::tests::test_try_from_u8_for_code ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_1 ... ok [INFO] [stdout] test record::quality_scores::iter::tests::test_size_hint ... ok [INFO] [stdout] test io::writer::header::container::tests::test_write_container ... ok [INFO] [stdout] test record::sequence::iter::tests::test_size_hint ... ok [INFO] [stdout] test record::quality_scores::iter::tests::test_iter ... ok [INFO] [stdout] test record::sequence::iter::tests::test_next ... ok [INFO] [stdout] test record::sequence::iter::with_positions::tests::test_next ... ok [INFO] [stdout] test record::tests::test_calculate_alignment_span ... ok [INFO] [stdout] test tests::test_calculate_normalized_sequence_digest ... ok [INFO] [stdout] test codecs::rans_4x8::tests::test_self_1 ... ok [INFO] [stdout] test codecs::fqzcomp::tests::test_self ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 168 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.27s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_cram [INFO] [stdout] [INFO] [stdout] running 73 tests [INFO] [stdout] test src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::build (line 82) ... ok [INFO] [stdout] test src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::ty (line 44) ... ok [INFO] [stdout] test src/crai/fs.rs - crai::fs::write (line 37) - compile ... ok [INFO] [stdout] test src/crai/fs.rs - crai::fs::read (line 17) - compile ... ok [INFO] [stdout] test src/crai/io/reader.rs - crai::io::reader::Reader::read_index (line 37) - compile ... ok [INFO] [stdout] test src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_data_series_encoder (line 38) ... ok [INFO] [stdout] test src/crai/io/reader.rs - crai::io::reader::Reader::new (line 20) ... ok [INFO] [stdout] test src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::new (line 17) ... ok [INFO] [stdout] test src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_core_data_encoder (line 25) ... ok [INFO] [stdout] test src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::tag (line 30) ... ok [INFO] [stdout] test src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_tag_values_encoder (line 61) ... ok [INFO] [stdout] test src/crai/io/writer.rs - crai::io::writer::Writer::finish (line 53) ... ok [INFO] [stdout] test src/crai/io/writer.rs - crai::io::writer::Writer::get_ref (line 37) ... ok [INFO] [stdout] test src/crai/io/writer.rs - crai::io::writer::Writer::new (line 23) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::reference_sequence_id (line 65) ... ok [INFO] [stdout] test src/container/block_content_encoder_map.rs - container::block_content_encoder_map::BlockContentEncoderMap::builder (line 24) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::slice_length (line 180) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::alignment_start (line 88) ... ok [INFO] [stdout] test src/file_definition.rs - file_definition::FileDefinition::new (line 22) ... ok [INFO] [stdout] test src/file_definition.rs - file_definition::FileDefinition::version (line 36) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::alignment_span (line 111) ... ok [INFO] [stdout] test src/file_definition/version.rs - file_definition::version::Version::minor (line 40) ... ok [INFO] [stdout] test src/file_definition/version.rs - file_definition::version::Version::major (line 27) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::offset (line 134) ... ok [INFO] [stdout] test src/fs/index.rs - fs::index::index (line 20) - compile ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 61) - compile ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::landmark (line 157) ... ok [INFO] [stdout] test src/crai/io/writer.rs - crai::io::writer::Writer::write_index (line 69) ... ok [INFO] [stdout] test src/file_definition/version.rs - file_definition::version::Version::new (line 15) ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 85) ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 45) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader (line 28) - compile ... ok [INFO] [stdout] test src/file_definition.rs - file_definition::FileDefinition::file_id (line 52) ... ok [INFO] [stdout] test src/crai/record.rs - crai::record::Record::new (line 30) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::get_ref (line 53) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::get_mut (line 67) ... ok [INFO] [stdout] test src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_reference_sequence_repository (line 25) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::new (line 100) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::query (line 297) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_container (line 213) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_file_definition (line 154) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_file_header (line 172) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::records (line 237) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::seek (line 266) - compile ... ok [INFO] [stdout] test src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 43) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::header_reader (line 118) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::read_header (line 195) - compile ... ok [INFO] [stdout] test src/io/reader/container/slice.rs - io::reader::container::slice::Slice<'c>::records (line 62) - compile ... ok [INFO] [stdout] test src/io/reader/header.rs - io::reader::header::Reader::read_file_id (line 79) - compile ... ok [INFO] [stdout] test src/io/reader/header.rs - io::reader::header::Reader::container_reader (line 105) - compile ... ok [INFO] [stdout] test src/io/reader/header.rs - io::reader::header::Reader::read_magic_number (line 36) - compile ... ok [INFO] [stdout] test src/io/reader/header.rs - io::reader::header::Reader::read_format_version (line 57) - compile ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::position (line 281) ... ok [INFO] [stdout] test src/io/reader.rs - io::reader::Reader::into_inner (line 81) ... ok [INFO] [stdout] test src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 59) ... ok [INFO] [stdout] test src/io/reader/header/container.rs - io::reader::header::container::Reader::raw_sam_header_reader (line 35) - compile ... ok [INFO] [stdout] test src/io/reader/builder.rs - io::reader::builder::Builder::set_reference_sequence_repository (line 22) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::into_inner (line 93) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::try_finish (line 129) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::new (line 112) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 95) - compile ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::get_mut (line 79) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::write_file_definition (line 151) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::get_ref (line 65) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 111) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::set_block_content_encoder_map (line 79) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::encode_alignment_start_positions_as_deltas (line 65) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::set_reference_sequence_repository (line 24) ... ok [INFO] [stdout] test src/io/writer/builder.rs - io::writer::builder::Builder::preserve_read_names (line 48) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::write_file_header (line 172) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::write_header (line 195) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer (line 35) ... ok [INFO] [stdout] test src/io/writer.rs - io::writer::Writer::write_record (line 221) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 73 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "71f65a6f4acb8f3aee759714500b58818cfba326426472ea6a8c4f2d18e58484", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71f65a6f4acb8f3aee759714500b58818cfba326426472ea6a8c4f2d18e58484", kill_on_drop: false }` [INFO] [stdout] 71f65a6f4acb8f3aee759714500b58818cfba326426472ea6a8c4f2d18e58484