[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] testing ncbi-vdb-sys-0.1.6 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-0-tc1/source [INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ef24c42e6c390fd745669b9fc5591640544bc3dfc11516ac1f200e25ffad7f6f [INFO] running `Command { std: "docker" "start" "-a" "ef24c42e6c390fd745669b9fc5591640544bc3dfc11516ac1f200e25ffad7f6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ef24c42e6c390fd745669b9fc5591640544bc3dfc11516ac1f200e25ffad7f6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ef24c42e6c390fd745669b9fc5591640544bc3dfc11516ac1f200e25ffad7f6f", kill_on_drop: false }` [INFO] [stdout] ef24c42e6c390fd745669b9fc5591640544bc3dfc11516ac1f200e25ffad7f6f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9333e580357e2ae284a368d6cd77e4198464df71a91f4351749919e19d765419 [INFO] running `Command { std: "docker" "start" "-a" "9333e580357e2ae284a368d6cd77e4198464df71a91f4351749919e19d765419", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-eeeaaaa7b257f0af/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' (83) panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x59fd933f7512 - std::backtrace_rs::backtrace::libunwind::trace::h7cddb8376417e7cc [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x59fd933f7512 - std::backtrace_rs::backtrace::trace_unsynchronized::hb4e41acf4b349ff1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x59fd933f7512 - std::sys::backtrace::_print_fmt::h1222b80910ba6eb5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x59fd933f7512 - ::fmt::h5bb8a979ba5db788 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x59fd93406a4f - core::fmt::rt::Argument::fmt::h2ee2c138a50a7796 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x59fd93406a4f - core::fmt::write::h1e0dbf07fe3990bd [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x59fd933cd373 - std::io::default_write_fmt::hb0810a37865e52a5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x59fd933cd373 - std::io::Write::write_fmt::h12c8908aaac7ca22 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x59fd933d6a22 - std::sys::backtrace::BacktraceLock::print::h788d486777205086 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x59fd933d879c - std::panicking::default_hook::{{closure}}::ha7bdfeb5949fc0fa [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x59fd933d85f6 - std::panicking::default_hook::h6dad75ec721846f4 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x59fd933d8d75 - std::panicking::panic_with_hook::hba00e869ada17676 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x59fd933d8bd6 - std::panicking::panic_handler::{{closure}}::h3d21149c258e5ceb [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x59fd933d6b59 - std::sys::backtrace::__rust_end_short_backtrace::h4f5d9b9dfb3e6ec1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x59fd933c16dd - __rustc[9a7a9f9af7564de1]::rust_begin_unwind [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x59fd9340a070 - core::panicking::panic_fmt::h78e817a90331d98b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x59fd933a49bb - build_script_build::main::h8032499733818e4a [INFO] [stderr] 17: 0x59fd933a51c3 - core::ops::function::FnOnce::call_once::h1c7e339e00a1b630 [INFO] [stderr] 18: 0x59fd933a4e86 - std::sys::backtrace::__rust_begin_short_backtrace::h2c13b63ff4f77edc [INFO] [stderr] 19: 0x59fd933a4d79 - std::rt::lang_start::{{closure}}::h543376ad6487b2c5 [INFO] [stderr] 20: 0x59fd933ceb00 - core::ops::function::impls:: for &F>::call_once::h1dc0a50e6295ec78 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x59fd933ceb00 - std::panicking::catch_unwind::do_call::h209f742e9999044e [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x59fd933ceb00 - std::panicking::catch_unwind::h508c6e2aa6d72749 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x59fd933ceb00 - std::panic::catch_unwind::hebcbb24aa9914693 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x59fd933ceb00 - std::rt::lang_start_internal::{{closure}}::h703cbe32967ef209 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x59fd933ceb00 - std::panicking::catch_unwind::do_call::hf50f2a30bce4e10b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x59fd933ceb00 - std::panicking::catch_unwind::hac448d7e3b12daa3 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x59fd933ceb00 - std::panic::catch_unwind::ha9d74a13d77f299c [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x59fd933ceb00 - std::rt::lang_start_internal::ha26d244788d1956d [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x59fd933a4d61 - std::rt::lang_start::hb6e0e51dcd0f0ac0 [INFO] [stderr] 30: 0x59fd933a8105 - main [INFO] [stderr] 31: 0x70c3badd91ca - [INFO] [stderr] 32: 0x70c3badd928b - __libc_start_main [INFO] [stderr] 33: 0x59fd933a3fa5 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "9333e580357e2ae284a368d6cd77e4198464df71a91f4351749919e19d765419", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9333e580357e2ae284a368d6cd77e4198464df71a91f4351749919e19d765419", kill_on_drop: false }` [INFO] [stdout] 9333e580357e2ae284a368d6cd77e4198464df71a91f4351749919e19d765419