[INFO] fetching crate miniprot-sys 0.1.0... [INFO] testing miniprot-sys-0.1.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate miniprot-sys 0.1.0 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate miniprot-sys 0.1.0 [INFO] finished tweaking crates.io crate miniprot-sys 0.1.0 [INFO] tweaked toml for crates.io crate miniprot-sys 0.1.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate miniprot-sys 0.1.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 57 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.63.0 (available: v0.72.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 55bbab7b801ee0cc6e97ff94ef5946e2a2602b2251bb853799e1fb10538d97ec [INFO] running `Command { std: "docker" "start" "-a" "55bbab7b801ee0cc6e97ff94ef5946e2a2602b2251bb853799e1fb10538d97ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "55bbab7b801ee0cc6e97ff94ef5946e2a2602b2251bb853799e1fb10538d97ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "55bbab7b801ee0cc6e97ff94ef5946e2a2602b2251bb853799e1fb10538d97ec", kill_on_drop: false }` [INFO] [stdout] 55bbab7b801ee0cc6e97ff94ef5946e2a2602b2251bb853799e1fb10538d97ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 04b47f193d2baa8e37fa5fdf7d7668ca41ea4861c4377b498f9e510543c091d3 [INFO] running `Command { std: "docker" "start" "-a" "04b47f193d2baa8e37fa5fdf7d7668ca41ea4861c4377b498f9e510543c091d3", kill_on_drop: false }` [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling miniprot-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: miniprot-sys@0.1.0: In file included from /usr/include/string.h:548, [INFO] [stderr] warning: miniprot-sys@0.1.0: from miniprot/nasw-sse.c:1: [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq_left' at miniprot/nasw-sse.c:163:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq' at miniprot/nasw-sse.c:127:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c: In function 'mp_ntseq_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:128:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 128 | fread(x, 4, 2, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:129:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 129 | fread(&nt->l_seq, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:136:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 136 | fread(&nt->ctg[i].len, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:142:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 142 | fread(nt->seq, 1, l, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:143:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 143 | fread(nt->name, 1, nt->l_name, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c: In function 'mp_idx_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:212:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 212 | fread(magic, 1, 4, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:216:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 216 | fread(&mi->opt, sizeof(mi->opt), 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:217:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 217 | fread(&mi->n_kb, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:221:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 221 | fread(mi->ki, 8, mp_n_bucket(&mi->opt), fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:222:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 222 | fread(mi->kb, 4, mi->n_kb, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stdout] warning: unused import: `libz_sys::*` [INFO] [stdout] --> src/lib.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use libz_sys::*; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.18s [INFO] running `Command { std: "docker" "inspect" "04b47f193d2baa8e37fa5fdf7d7668ca41ea4861c4377b498f9e510543c091d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04b47f193d2baa8e37fa5fdf7d7668ca41ea4861c4377b498f9e510543c091d3", kill_on_drop: false }` [INFO] [stdout] 04b47f193d2baa8e37fa5fdf7d7668ca41ea4861c4377b498f9e510543c091d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f0bc769d413989be7ca77eb5cec73114980c8c8d4bfb2d642f8b5f5c6211625a [INFO] running `Command { std: "docker" "start" "-a" "f0bc769d413989be7ca77eb5cec73114980c8c8d4bfb2d642f8b5f5c6211625a", kill_on_drop: false }` [INFO] [stderr] Compiling miniprot-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: miniprot-sys@0.1.0: In file included from /usr/include/string.h:548, [INFO] [stderr] warning: miniprot-sys@0.1.0: from miniprot/nasw-sse.c:1: [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq_left' at miniprot/nasw-sse.c:163:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq' at miniprot/nasw-sse.c:127:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c: In function 'mp_ntseq_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:128:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 128 | fread(x, 4, 2, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:129:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 129 | fread(&nt->l_seq, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:136:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 136 | fread(&nt->ctg[i].len, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:142:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 142 | fread(nt->seq, 1, l, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:143:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 143 | fread(nt->name, 1, nt->l_name, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c: In function 'mp_idx_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:212:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 212 | fread(magic, 1, 4, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:216:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 216 | fread(&mi->opt, sizeof(mi->opt), 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:217:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 217 | fread(&mi->n_kb, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:221:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 221 | fread(mi->ki, 8, mp_n_bucket(&mi->opt), fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:222:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 222 | fread(mi->kb, 4, mi->n_kb, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stdout] warning: unused import: `libz_sys::*` [INFO] [stdout] --> src/lib.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use libz_sys::*; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `libz_sys::*` [INFO] [stdout] --> src/lib.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use libz_sys::*; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:59:17 [INFO] [stdout] | [INFO] [stdout] 59 | let mut mi: *mut mp_idx_t = mp_idx_load(reference.as_ptr() as *const i8, io.as_ptr(), 1); // Miniprot initialize index [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:61:17 [INFO] [stdout] | [INFO] [stdout] 61 | let mut mo = mo.assume_init(); [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 6.61s [INFO] running `Command { std: "docker" "inspect" "f0bc769d413989be7ca77eb5cec73114980c8c8d4bfb2d642f8b5f5c6211625a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0bc769d413989be7ca77eb5cec73114980c8c8d4bfb2d642f8b5f5c6211625a", kill_on_drop: false }` [INFO] [stdout] f0bc769d413989be7ca77eb5cec73114980c8c8d4bfb2d642f8b5f5c6211625a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 63085744a84361dbeb4aa4815e1900d2bdab0003ecfb2e6df188f2e8241f7850 [INFO] running `Command { std: "docker" "start" "-a" "63085744a84361dbeb4aa4815e1900d2bdab0003ecfb2e6df188f2e8241f7850", kill_on_drop: false }` [INFO] [stderr] Compiling miniprot-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: miniprot-sys@0.1.0: In file included from /usr/include/string.h:548, [INFO] [stderr] warning: miniprot-sys@0.1.0: from miniprot/nasw-sse.c:1: [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq_left' at miniprot/nasw-sse.c:163:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: In function 'memset', [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_nas' at miniprot/nasw-sse.c:84:2, [INFO] [stderr] warning: miniprot-sys@0.1.0: inlined from 'ns_prep_seq' at miniprot/nasw-sse.c:127:2: [INFO] [stderr] warning: miniprot-sys@0.1.0: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin_memset' specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [INFO] [stderr] warning: miniprot-sys@0.1.0: 59 | return __builtin___memset_chk (__dest, __ch, __len, [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: 60 | __glibc_objsize0 (__dest)); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c: In function 'mp_ntseq_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:128:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 128 | fread(x, 4, 2, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:129:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 129 | fread(&nt->l_seq, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:136:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 136 | fread(&nt->ctg[i].len, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:142:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 142 | fread(nt->seq, 1, l, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/ntseq.c:143:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 143 | fread(nt->name, 1, nt->l_name, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c: In function 'mp_idx_restore': [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:212:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 212 | fread(magic, 1, 4, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:216:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 216 | fread(&mi->opt, sizeof(mi->opt), 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:217:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 217 | fread(&mi->n_kb, 8, 1, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:221:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 221 | fread(mi->ki, 8, mp_n_bucket(&mi->opt), fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: miniprot-sys@0.1.0: miniprot/index.c:222:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: miniprot-sys@0.1.0: 222 | fread(mi->kb, 4, mi->n_kb, fp); [INFO] [stderr] warning: miniprot-sys@0.1.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: unused import: `libz_sys::*` [INFO] [stderr] --> src/lib.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use libz_sys::*; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `miniprot-sys` (lib) generated 1 warning (run `cargo fix --lib -p miniprot-sys` to apply 1 suggestion) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:59:17 [INFO] [stderr] | [INFO] [stderr] 59 | let mut mi: *mut mp_idx_t = mp_idx_load(reference.as_ptr() as *const i8, io.as_ptr(), 1); // Miniprot initialize index [INFO] [stderr] | ----^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:61:17 [INFO] [stderr] | [INFO] [stderr] 61 | let mut mo = mo.assume_init(); [INFO] [stderr] | ----^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: `miniprot-sys` (lib test) generated 3 warnings (1 duplicate) (run `cargo fix --lib -p miniprot-sys --tests` to apply 2 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.53s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/miniprot_sys-1ba5f5299c02cab8) [INFO] [stdout] [INFO] [stdout] running 58 tests [INFO] [stdout] test bindgen_test_layout__G_fpos_t ... ok [INFO] [stdout] test bindgen_test_layout__G_fpos64_t ... ok [INFO] [stdout] test bindgen_test_layout___atomic_wide_counter ... ok [INFO] [stdout] test bindgen_test_layout__IO_FILE ... ok [INFO] [stdout] test bindgen_test_layout___mbstate_t ... ok [INFO] [stdout] test bindgen_test_layout___mbstate_t__bindgen_ty_1 ... ok [INFO] [stdout] test bindgen_test_layout___atomic_wide_counter__bindgen_ty_1 ... ok [INFO] [stdout] test bindgen_test_layout___fsid_t ... ok [INFO] [stdout] test bindgen_test_layout___once_flag ... ok [INFO] [stdout] test bindgen_test_layout___locale_struct ... ok [INFO] [stdout] test bindgen_test_layout___pthread_internal_slist ... ok [INFO] [stdout] test bindgen_test_layout___kstring_t ... ok [INFO] [stdout] test bindgen_test_layout___pthread_mutex_s ... ok [INFO] [stdout] test bindgen_test_layout___pthread_rwlock_arch_t ... ok [INFO] [stdout] test bindgen_test_layout___pthread_internal_list ... ok [INFO] [stdout] test bindgen_test_layout___sigset_t ... ok [INFO] [stdout] test bindgen_test_layout___va_list_tag ... ok [INFO] [stdout] test bindgen_test_layout_div_t ... ok [INFO] [stdout] test bindgen_test_layout_drand48_data ... ok [INFO] [stdout] test bindgen_test_layout_fd_set ... ok [INFO] [stdout] test bindgen_test_layout_gzFile_s ... ok [INFO] [stdout] test bindgen_test_layout_gz_header_s ... ok [INFO] [stdout] test bindgen_test_layout_km_stat_t ... ok [INFO] [stdout] test bindgen_test_layout_ketopt_t ... ok [INFO] [stdout] test bindgen_test_layout_ks_isort_stack_t ... ok [INFO] [stdout] test bindgen_test_layout_ko_longopt_t ... ok [INFO] [stdout] test bindgen_test_layout_ldiv_t ... ok [INFO] [stdout] test bindgen_test_layout_mp128_t ... ok [INFO] [stdout] test bindgen_test_layout_lldiv_t ... ok [INFO] [stdout] test bindgen_test_layout_mp64_v ... ok [INFO] [stdout] test bindgen_test_layout_mp128_v ... ok [INFO] [stdout] test bindgen_test_layout_max_align_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_ctg_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_bseq1_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_idx_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_idxopt_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_mapopt_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_ntdb_t ... ok [INFO] [stdout] test bindgen_test_layout_ns_opt_t ... ok [INFO] [stderr] [M::mp_ntseq_read@0.000*22.23] read 27033 bases in 1 contigs [INFO] [stdout] test bindgen_test_layout_mp_extra_t ... ok [INFO] [stderr] [M::mp_idx_build@0.000*20.93] 212 blocks [INFO] [stdout] test bindgen_test_layout_mp_reg1_t ... ok [INFO] [stdout] test bindgen_test_layout_mp_feat_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_attr_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_barrier_t ... ok [INFO] [stdout] test bindgen_test_layout_ns_rst_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_mutex_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_mutexattr_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_barrierattr_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_cond_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_condattr_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_rwlock_t ... ok [INFO] [stdout] test bindgen_test_layout_pthread_rwlockattr_t ... ok [INFO] [stdout] test bindgen_test_layout_random_data ... ok [INFO] [stdout] test bindgen_test_layout_timespec ... ok [INFO] [stdout] test bindgen_test_layout_timeval ... ok [INFO] [stdout] test bindgen_test_layout_z_stream_s ... ok [INFO] [stderr] [M::mp_idx_build@0.002*5.25] collected syncmers [INFO] [stdout] test bindgen_test_layout___pthread_cond_s ... ok [INFO] [stderr] [M::mp_idx_build@0.072*1.04] 16125 kmer-block pairs [INFO] [stderr] [M::mp_idx_print_stat] 14397 distinct k-mers; mean occ of infrequent k-mers: 1.12; 0 frequent k-mers accounting for 0 occurrences [INFO] [stderr] [M::worker_pipeline::0.092*0.96] mapped 1 sequences [INFO] [stdout] test tests::test_miniprot ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 58 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s [INFO] [stdout] [INFO] [stdout] ENSMUSP00000025851.4 738 0 738 + chr11:66478458-66505490 27033 0 27030 2055 2214 0 AS:i:3031 ms:i:3549 np:i:711 da:i:0 do:i:0 cg:Z:90M2702N30M1272N46M590N25M571N31M3235U43M110N43M76V19M962U64M159U37M361N31M1572N21M96N41M143V40M1547N60M7134N54M4307U49M1I7M cs:Z::34*tacH:55~gt2702ag:30~gt1272ag*gaaD:2*gaaG:6*gagK:4*cacR:5*ggcD:6*gagD:17~gt590ag:1*atcV:6*aatD:16~gt571ag:11*gagV:1*gatG*ggaQ:3*cccS*tacH:9*ggcN*tcaT*gD~gt3232ag-ag:1*tccA:4*gtgL:5*agcR:3*cggQ:1*agcN*cctH:17*cagH:5~gt110ag:8*gggE:6*ataV:27*agS~gt73ag-t:19*gG~gt959ag-gt:3*gtgM:26*ccaL*accA:32*tY~gt156ag-ac:23*acgA*cagK:9*gatE:2~gt361ag:4*ctcR:26~gt1572ag:9*cagK:11~gt96ag:36*cacN:4*gaE~gt140ag-g:35*ttcA:4~gt1547ag:22*atcV:25*aagR:11~gt7134ag:8*gccV*ggaA:9*acgA:34*gG~gt4304ag-gc:1*gacE:3*ctgV:13*tctC:12*atcV:1*acaI:3*acaA:6*aagR*ggcN*cccQ*agtA+Q:3*tctP:3 [INFO] [stderr] Doc-tests miniprot_sys [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "63085744a84361dbeb4aa4815e1900d2bdab0003ecfb2e6df188f2e8241f7850", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63085744a84361dbeb4aa4815e1900d2bdab0003ecfb2e6df188f2e8241f7850", kill_on_drop: false }` [INFO] [stdout] 63085744a84361dbeb4aa4815e1900d2bdab0003ecfb2e6df188f2e8241f7850