[INFO] fetching crate mermer-rs 0.1.0... [INFO] testing mermer-rs-0.1.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate mermer-rs 0.1.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate mermer-rs 0.1.0 [INFO] finished tweaking crates.io crate mermer-rs 0.1.0 [INFO] tweaked toml for crates.io crate mermer-rs 0.1.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate mermer-rs 0.1.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c4467318423302e45cf7626ef82f8e078e147505c12417c809b539ce08d6657f [INFO] running `Command { std: "docker" "start" "-a" "c4467318423302e45cf7626ef82f8e078e147505c12417c809b539ce08d6657f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c4467318423302e45cf7626ef82f8e078e147505c12417c809b539ce08d6657f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c4467318423302e45cf7626ef82f8e078e147505c12417c809b539ce08d6657f", kill_on_drop: false }` [INFO] [stdout] c4467318423302e45cf7626ef82f8e078e147505c12417c809b539ce08d6657f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 56e5fdd30d8b2976332555f837f712003dc21a3975c0da9d3e7cb3104fea8db7 [INFO] running `Command { std: "docker" "start" "-a" "56e5fdd30d8b2976332555f837f712003dc21a3975c0da9d3e7cb3104fea8db7", kill_on_drop: false }` [INFO] [stderr] Compiling mermer-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `name`, `position`, and `size` are never read [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 49 | pub struct Chromosome { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Chromosome` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `make_reverse_complement` is never used [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.27s [INFO] running `Command { std: "docker" "inspect" "56e5fdd30d8b2976332555f837f712003dc21a3975c0da9d3e7cb3104fea8db7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56e5fdd30d8b2976332555f837f712003dc21a3975c0da9d3e7cb3104fea8db7", kill_on_drop: false }` [INFO] [stdout] 56e5fdd30d8b2976332555f837f712003dc21a3975c0da9d3e7cb3104fea8db7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f6650d49057397c3b0ec201f07736811b19a6a4d2a1db99c4e27310aebb75713 [INFO] running `Command { std: "docker" "start" "-a" "f6650d49057397c3b0ec201f07736811b19a6a4d2a1db99c4e27310aebb75713", kill_on_drop: false }` [INFO] [stderr] Compiling mermer-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `name`, `position`, and `size` are never read [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 49 | pub struct Chromosome { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Chromosome` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `make_reverse_complement` is never used [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `name`, `position`, and `size` are never read [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 49 | pub struct Chromosome { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Chromosome` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `make_reverse_complement` is never used [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.40s [INFO] running `Command { std: "docker" "inspect" "f6650d49057397c3b0ec201f07736811b19a6a4d2a1db99c4e27310aebb75713", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6650d49057397c3b0ec201f07736811b19a6a4d2a1db99c4e27310aebb75713", kill_on_drop: false }` [INFO] [stdout] f6650d49057397c3b0ec201f07736811b19a6a4d2a1db99c4e27310aebb75713 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6a85f404ac831d3c96fd7fa62c9e6dfd60cb8c2e58cf6c27aa015e123bed9f70 [INFO] running `Command { std: "docker" "start" "-a" "6a85f404ac831d3c96fd7fa62c9e6dfd60cb8c2e58cf6c27aa015e123bed9f70", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/lib.rs:45:27 [INFO] [stderr] | [INFO] [stderr] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: fields `name`, `position`, and `size` are never read [INFO] [stderr] --> src/lib.rs:50:5 [INFO] [stderr] | [INFO] [stderr] 49 | pub struct Chromosome { [INFO] [stderr] | ---------- fields in this struct [INFO] [stderr] 50 | name: String, [INFO] [stderr] | ^^^^ [INFO] [stderr] 51 | position: u64, [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] 52 | size: u64, [INFO] [stderr] | ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `Chromosome` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `make_reverse_complement` is never used [INFO] [stderr] --> src/lib.rs:240:4 [INFO] [stderr] | [INFO] [stderr] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `mermer-rs` (lib) generated 3 warnings (run `cargo fix --lib -p mermer-rs` to apply 1 suggestion) [INFO] [stderr] warning: `mermer-rs` (lib test) generated 3 warnings (3 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mermer_rs-e931231a79298af2) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_substitute_char ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests mermer_rs [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/lib.rs:45:27 [INFO] [stderr] | [INFO] [stderr] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test src/lib.rs - substitute_char (line 276) ... FAILED [INFO] [stdout] test src/lib.rs - read_fasta (line 159) ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/lib.rs - substitute_char (line 276) stdout ---- [INFO] [stdout] error[E0425]: cannot find function `substitute_char` in this scope [INFO] [stdout] --> src/lib.rs:277:20 [INFO] [stdout] | [INFO] [stdout] 3 | assert_eq!("CAAA", substitute_char("AAAA", 0, 'C')); [INFO] [stdout] | ^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `substitute_char` in this scope [INFO] [stdout] --> src/lib.rs:278:20 [INFO] [stdout] | [INFO] [stdout] 4 | assert_eq!("AACA", substitute_char("AAAA", 2, 'C')); [INFO] [stdout] | ^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/lib.rs - read_fasta (line 159) stdout ---- [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `File` [INFO] [stdout] --> src/lib.rs:160:9 [INFO] [stdout] | [INFO] [stdout] 3 | let f = File::open("dm6.fa").unwrap(); [INFO] [stdout] | ^^^^ use of undeclared type `File` [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 2 + use std::fs::File; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `read_fasta` in this scope [INFO] [stdout] --> src/lib.rs:161:27 [INFO] [stdout] | [INFO] [stdout] 4 | let (_, _, chromosomes) = read_fasta(&f).unwrap(); [INFO] [stdout] | ^^^^^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this function [INFO] [stdout] | [INFO] [stdout] 2 + use mermer_rs::read_fasta; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0433. [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/lib.rs - read_fasta (line 159) [INFO] [stdout] src/lib.rs - substitute_char (line 276) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "6a85f404ac831d3c96fd7fa62c9e6dfd60cb8c2e58cf6c27aa015e123bed9f70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a85f404ac831d3c96fd7fa62c9e6dfd60cb8c2e58cf6c27aa015e123bed9f70", kill_on_drop: false }` [INFO] [stdout] 6a85f404ac831d3c96fd7fa62c9e6dfd60cb8c2e58cf6c27aa015e123bed9f70