[INFO] fetching crate librna-sys 0.3.0... [INFO] testing librna-sys-0.3.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate librna-sys 0.3.0 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate librna-sys 0.3.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.3.0 [INFO] tweaked toml for crates.io crate librna-sys 0.3.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate librna-sys 0.3.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate librna-sys 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-build-config v0.22.2 [INFO] [stderr] Downloaded pyo3-macros v0.22.2 [INFO] [stderr] Downloaded pyo3-ffi v0.22.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.22.2 [INFO] [stderr] Downloaded pyo3 v0.22.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ee3abea357d1415096eeffbeb4f706730b8b9ad8c31453ccab0e7dfe93832b03 [INFO] running `Command { std: "docker" "start" "-a" "ee3abea357d1415096eeffbeb4f706730b8b9ad8c31453ccab0e7dfe93832b03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ee3abea357d1415096eeffbeb4f706730b8b9ad8c31453ccab0e7dfe93832b03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee3abea357d1415096eeffbeb4f706730b8b9ad8c31453ccab0e7dfe93832b03", kill_on_drop: false }` [INFO] [stdout] ee3abea357d1415096eeffbeb4f706730b8b9ad8c31453ccab0e7dfe93832b03 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9b342a3da9e5d512d62639e82f499bcca830568b2aa8532fa1abcdb778d0dc8f [INFO] running `Command { std: "docker" "start" "-a" "9b342a3da9e5d512d62639e82f499bcca830568b2aa8532fa1abcdb778d0dc8f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling bindgen v0.70.1 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling libloading v0.7.3 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling clang-sys v1.3.1 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling librna-sys v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: librna-sys@0.3.0: pkg_config failed ( [INFO] [stderr] warning: librna-sys@0.3.0: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] warning: librna-sys@0.3.0: libRNA.a not found! [INFO] [stderr] warning: librna-sys@0.3.0: Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.0 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-99c035cfcd930ea2/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_LIB_DIR [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR [INFO] [stderr] cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:warning=pkg_config failed ( [INFO] [stderr] pkg-config exited with status code 1 [INFO] [stderr] > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0 [INFO] [stderr] [INFO] [stderr] The system library `RNAlib2` required by crate `librna-sys` was not found. [INFO] [stderr] The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory. [INFO] [stderr] The PKG_CONFIG_PATH environment variable is not set. [INFO] [stderr] [INFO] [stderr] HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`. [INFO] [stderr] ). [INFO] [stderr] cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] cargo:warning=libRNA.a not found! [INFO] [stderr] cargo:warning=Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] cargo:rustc-link-lib=gsl [INFO] [stderr] cargo:rustc-link-lib=mpfr [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=gmp [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:include=/usr/include/ViennaRNA [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] [INFO] [stderr] thread 'main' (537) panicked at src/build.rs:95:10: [INFO] [stderr] Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n") [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x57c2b46300b2 - std::backtrace_rs::backtrace::libunwind::trace::h7cddb8376417e7cc [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x57c2b46300b2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb4e41acf4b349ff1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x57c2b46300b2 - std::sys::backtrace::_print_fmt::h1222b80910ba6eb5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x57c2b46300b2 - ::fmt::h5bb8a979ba5db788 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x57c2b464151f - core::fmt::rt::Argument::fmt::h2ee2c138a50a7796 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x57c2b464151f - core::fmt::write::h1e0dbf07fe3990bd [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x57c2b4600e83 - std::io::default_write_fmt::hb0810a37865e52a5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x57c2b4600e83 - std::io::Write::write_fmt::h12c8908aaac7ca22 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x57c2b460bbd2 - std::sys::backtrace::BacktraceLock::print::h788d486777205086 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x57c2b460ec4f - std::panicking::default_hook::{{closure}}::ha7bdfeb5949fc0fa [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x57c2b460eaa9 - std::panicking::default_hook::h6dad75ec721846f4 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x57c2b460f2d5 - std::panicking::panic_with_hook::hba00e869ada17676 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x57c2b460f0ba - std::panicking::panic_handler::{{closure}}::h3d21149c258e5ceb [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x57c2b460bd09 - std::sys::backtrace::__rust_end_short_backtrace::h4f5d9b9dfb3e6ec1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x57c2b45f4b0d - __rustc[9a7a9f9af7564de1]::rust_begin_unwind [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x57c2b464b420 - core::panicking::panic_fmt::h78e817a90331d98b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x57c2b464a6b6 - core::result::unwrap_failed::h3ce108722ad88f1e [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/result.rs:1852:5 [INFO] [stderr] 17: 0x57c2b4113714 - core::result::Result::expect::hfb17cbbac29c9f46 [INFO] [stderr] 18: 0x57c2b4111345 - build_script_build::main::h49148f19a2194d5d [INFO] [stderr] 19: 0x57c2b4112543 - core::ops::function::FnOnce::call_once::h3cc5b9a4a424b3f9 [INFO] [stderr] 20: 0x57c2b4112106 - std::sys::backtrace::__rust_begin_short_backtrace::ha9f64a278c08a462 [INFO] [stderr] 21: 0x57c2b41120e9 - std::rt::lang_start::{{closure}}::h6422c0530078a390 [INFO] [stderr] 22: 0x57c2b4602870 - core::ops::function::impls:: for &F>::call_once::h1dc0a50e6295ec78 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 23: 0x57c2b4602870 - std::panicking::catch_unwind::do_call::h209f742e9999044e [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 24: 0x57c2b4602870 - std::panicking::catch_unwind::h508c6e2aa6d72749 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 25: 0x57c2b4602870 - std::panic::catch_unwind::hebcbb24aa9914693 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x57c2b4602870 - std::rt::lang_start_internal::{{closure}}::h703cbe32967ef209 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x57c2b4602870 - std::panicking::catch_unwind::do_call::hf50f2a30bce4e10b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 28: 0x57c2b4602870 - std::panicking::catch_unwind::hac448d7e3b12daa3 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 29: 0x57c2b4602870 - std::panic::catch_unwind::ha9d74a13d77f299c [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x57c2b4602870 - std::rt::lang_start_internal::ha26d244788d1956d [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x57c2b41120d1 - std::rt::lang_start::h1369261d462eae78 [INFO] [stderr] 32: 0x57c2b41153a5 - main [INFO] [stderr] 33: 0x7b20bcae61ca - [INFO] [stderr] 34: 0x7b20bcae628b - __libc_start_main [INFO] [stderr] 35: 0x57c2b410f875 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "9b342a3da9e5d512d62639e82f499bcca830568b2aa8532fa1abcdb778d0dc8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b342a3da9e5d512d62639e82f499bcca830568b2aa8532fa1abcdb778d0dc8f", kill_on_drop: false }` [INFO] [stdout] 9b342a3da9e5d512d62639e82f499bcca830568b2aa8532fa1abcdb778d0dc8f