[INFO] fetching crate freesasa-rs 0.1.3... [INFO] testing freesasa-rs-0.1.3 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate freesasa-rs 0.1.3 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate freesasa-rs 0.1.3 [INFO] finished tweaking crates.io crate freesasa-rs 0.1.3 [INFO] tweaked toml for crates.io crate freesasa-rs 0.1.3 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate freesasa-rs 0.1.3 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 168 packages to latest compatible versions [INFO] [stderr] Adding criterion v0.4.0 (available: v0.7.0) [INFO] [stderr] Adding env_logger v0.10.2 (available: v0.11.8) [INFO] [stderr] Adding pdbtbx v0.11.0 (available: v0.12.0) [INFO] [stderr] Adding serde_with v2.3.3 (available: v3.14.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded autotools v0.2.7 [INFO] [stderr] Downloaded doc-cfg v0.1.0 [INFO] [stderr] Downloaded criterion v0.4.0 [INFO] [stderr] Downloaded pdbtbx v0.11.0 [INFO] [stderr] Downloaded freesasa-sys v0.1.12 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 73604773f42678f9a0345fa2132e8d0d99a93169e9f50d2b61daba7125526138 [INFO] running `Command { std: "docker" "start" "-a" "73604773f42678f9a0345fa2132e8d0d99a93169e9f50d2b61daba7125526138", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "73604773f42678f9a0345fa2132e8d0d99a93169e9f50d2b61daba7125526138", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "73604773f42678f9a0345fa2132e8d0d99a93169e9f50d2b61daba7125526138", kill_on_drop: false }` [INFO] [stdout] 73604773f42678f9a0345fa2132e8d0d99a93169e9f50d2b61daba7125526138 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e5c96030492afe2895153a915e4632f3fb3671be084fb28aff7d427891977815 [INFO] running `Command { std: "docker" "start" "-a" "e5c96030492afe2895153a915e4632f3fb3671be084fb28aff7d427891977815", kill_on_drop: false }` [INFO] [stderr] Compiling prettyplease v0.2.37 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling heapless v0.7.17 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling link-cplusplus v1.0.10 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling hash32 v0.2.1 [INFO] [stderr] Compiling autotools v0.2.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling fs_extra v1.3.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling rstar v0.11.0 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling doc-cfg v0.1.0 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling serde_with_macros v2.3.3 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling serde_json v1.0.143 [INFO] [stderr] Compiling pdbtbx v0.11.0 [INFO] [stderr] Compiling serde_with v2.3.3 [INFO] [stderr] Compiling freesasa-sys v0.1.12 [INFO] [stderr] error: failed to run custom build command for `freesasa-sys v0.1.12` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/freesasa-sys-3000991798ab3c30/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa" && "sh" "-c" "exec \"$0\" \"$@\"" "autoreconf" "-i" [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/build" && CC="cc" CFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" CXX="c++" CXXFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" LC_ALL="C" "sh" "-c" "exec \"$0\" \"$@\"" "/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/configure" "--prefix=/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out" "--disable-shared" "--enable-static" "--disable-json" "--disable-threads" "--disable-xml" [INFO] [stderr] checking for a BSD-compatible install... /usr/bin/install -c [INFO] [stderr] checking whether build environment is sane... yes [INFO] [stderr] checking for a race-free mkdir -p... /usr/bin/mkdir -p [INFO] [stderr] checking for gawk... no [INFO] [stderr] checking for mawk... mawk [INFO] [stderr] checking whether make sets $(MAKE)... yes [INFO] [stderr] checking whether make supports nested variables... yes [INFO] [stderr] checking for gcc... cc [INFO] [stderr] checking whether the C compiler works... yes [INFO] [stderr] checking for C compiler default output file name... a.out [INFO] [stderr] checking for suffix of executables... [INFO] [stderr] checking whether we are cross compiling... no [INFO] [stderr] checking for suffix of object files... o [INFO] [stderr] checking whether the compiler supports GNU C... yes [INFO] [stderr] checking whether cc accepts -g... yes [INFO] [stderr] checking for cc option to enable C11 features... none needed [INFO] [stderr] checking whether cc understands -c and -o together... yes [INFO] [stderr] checking whether make supports the include directive... yes (GNU style) [INFO] [stderr] checking dependency style of cc... gcc3 [INFO] [stderr] checking whether the compiler supports GNU C++... yes [INFO] [stderr] checking whether c++ accepts -g... yes [INFO] [stderr] checking for c++ option to enable C++11 features... none needed [INFO] [stderr] checking dependency style of c++... gcc3 [INFO] [stderr] checking for ranlib... ranlib [INFO] [stderr] checking for sqrt in -lm... yes [INFO] [stderr] checking for dlsym in -ldl... yes [INFO] [stderr] checking for stdio.h... yes [INFO] [stderr] checking for stdlib.h... yes [INFO] [stderr] checking for string.h... yes [INFO] [stderr] checking for inttypes.h... yes [INFO] [stderr] checking for stdint.h... yes [INFO] [stderr] checking for strings.h... yes [INFO] [stderr] checking for sys/stat.h... yes [INFO] [stderr] checking for sys/types.h... yes [INFO] [stderr] checking for unistd.h... yes [INFO] [stderr] checking for size_t... yes [INFO] [stderr] checking for working alloca.h... yes [INFO] [stderr] checking for alloca... yes [INFO] [stderr] checking for inttypes.h... (cached) yes [INFO] [stderr] checking for libintl.h... yes [INFO] [stderr] checking for malloc.h... yes [INFO] [stderr] checking for stddef.h... yes [INFO] [stderr] checking for stdlib.h... (cached) yes [INFO] [stderr] checking for string.h... (cached) yes [INFO] [stderr] checking for strings.h... (cached) yes [INFO] [stderr] checking for sys/time.h... yes [INFO] [stderr] checking for unistd.h... (cached) yes [INFO] [stderr] checking for dlfcn.h... yes [INFO] [stderr] checking for inline... inline [INFO] [stderr] checking for size_t... (cached) yes [INFO] [stderr] checking for C/C++ restrict keyword... __restrict__ [INFO] [stderr] checking for int16_t... yes [INFO] [stderr] checking for int32_t... yes [INFO] [stderr] checking for int8_t... yes [INFO] [stderr] checking for uint16_t... yes [INFO] [stderr] checking for uint32_t... yes [INFO] [stderr] checking for uint64_t... yes [INFO] [stderr] checking for uint8_t... yes [INFO] [stderr] checking for inline... (cached) inline [INFO] [stderr] checking build system type... x86_64-pc-linux-gnu [INFO] [stderr] checking host system type... x86_64-pc-linux-gnu [INFO] [stderr] checking for GNU libc compatible malloc... yes [INFO] [stderr] checking for GNU libc compatible realloc... yes [INFO] [stderr] checking for memset... yes [INFO] [stderr] checking for mkdir... yes [INFO] [stderr] checking for sqrt... yes [INFO] [stderr] checking for strchr... yes [INFO] [stderr] checking for strdup... yes [INFO] [stderr] checking for strerror... yes [INFO] [stderr] checking for strncasecmp... yes [INFO] [stderr] checking for getopt_long... yes [INFO] [stderr] checking for getline... yes [INFO] [stderr] checking whether c++ supports C++14 features with -std=gnu++14... yes [INFO] [stderr] Building without thread support [INFO] [stderr] configure: Building without support for XML output. [INFO] [stderr] configure: Building without support for JSON output. [INFO] [stderr] checking that generated files are newer than configure... done [INFO] [stderr] configure: creating ./config.status [INFO] [stderr] config.status: creating Makefile [INFO] [stderr] config.status: creating src/Makefile [INFO] [stderr] config.status: creating doc/Makefile [INFO] [stderr] config.status: creating doc/Doxyfile [INFO] [stderr] config.status: creating doc/man/freesasa.1 [INFO] [stderr] config.status: creating tests/Makefile [INFO] [stderr] config.status: creating share/Makefile [INFO] [stderr] config.status: creating tests/test-cli [INFO] [stderr] config.status: creating config.h [INFO] [stderr] config.status: executing depfiles commands [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "sh" "-c" "exec \"$0\" \"$@\"" "make" "install" "-j8" [INFO] [stderr] Making install in src [INFO] [stderr] make[1]: Entering directory '/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/build/src' [INFO] [stderr] c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/main.cc [INFO] [stderr] c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT cif.o -MD -MP -MF .deps/cif.Tpo -c -o cif.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/cif.cc [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier.o -MD -MP -MF .deps/classifier.Tpo -c -o classifier.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/classifier.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_protor.o -MD -MP -MF .deps/classifier_protor.Tpo -c -o classifier_protor.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/classifier_protor.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_oons.o -MD -MP -MF .deps/classifier_oons.Tpo -c -o classifier_oons.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/classifier_oons.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_naccess.o -MD -MP -MF .deps/classifier_naccess.Tpo -c -o classifier_naccess.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/classifier_naccess.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT coord.o -MD -MP -MF .deps/coord.Tpo -c -o coord.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/coord.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT pdb.o -MD -MP -MF .deps/pdb.Tpo -c -o pdb.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/pdb.c [INFO] [stderr] mv -f .deps/classifier_protor.Tpo .deps/classifier_protor.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT log.o -MD -MP -MF .deps/log.Tpo -c -o log.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/log.c [INFO] [stderr] mv -f .deps/classifier_naccess.Tpo .deps/classifier_naccess.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_lr.o -MD -MP -MF .deps/sasa_lr.Tpo -c -o sasa_lr.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/sasa_lr.c [INFO] [stderr] mv -f .deps/pdb.Tpo .deps/pdb.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_sr.o -MD -MP -MF .deps/sasa_sr.Tpo -c -o sasa_sr.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/sasa_sr.c [INFO] [stderr] mv -f .deps/sasa_sr.Tpo .deps/sasa_sr.Po [INFO] [stderr] mv -f .deps/classifier_oons.Tpo .deps/classifier_oons.Po [INFO] [stderr] mv -f .deps/log.Tpo .deps/log.Po [INFO] [stderr] mv -f .deps/sasa_lr.Tpo .deps/sasa_lr.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT structure.o -MD -MP -MF .deps/structure.Tpo -c -o structure.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/structure.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT node.o -MD -MP -MF .deps/node.Tpo -c -o node.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/node.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT freesasa.o -MD -MP -MF .deps/freesasa.Tpo -c -o freesasa.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/freesasa.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT nb.o -MD -MP -MF .deps/nb.Tpo -c -o nb.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/nb.c [INFO] [stderr] mv -f .deps/coord.Tpo .deps/coord.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/util.c [INFO] [stderr] mv -f .deps/freesasa.Tpo .deps/freesasa.Po [INFO] [stderr] mv -f .deps/classifier.Tpo .deps/classifier.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT rsa.o -MD -MP -MF .deps/rsa.Tpo -c -o rsa.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/rsa.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT selection.o -MD -MP -MF .deps/selection.Tpo -c -o selection.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/selection.c [INFO] [stderr] mv -f .deps/nb.Tpo .deps/nb.Po [INFO] [stderr] mv -f .deps/node.Tpo .deps/node.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT lexer.o -MD -MP -MF .deps/lexer.Tpo -c -o lexer.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/lexer.c [INFO] [stderr] mv -f .deps/util.Tpo .deps/util.Po [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/parser.c [INFO] [stderr] cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src -I.. -I/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/third-party/gemmi/include/ -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT example.o -MD -MP -MF .deps/example.Tpo -c -o example.o /opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/freesasa/src/example.c [INFO] [stderr] mv -f .deps/rsa.Tpo .deps/rsa.Po [INFO] [stderr] mv -f .deps/example.Tpo .deps/example.Po [INFO] [stderr] mv -f .deps/parser.Tpo .deps/parser.Po [INFO] [stderr] mv -f .deps/selection.Tpo .deps/selection.Po [INFO] [stderr] mv -f .deps/lexer.Tpo .deps/lexer.Po [INFO] [stderr] mv -f .deps/structure.Tpo .deps/structure.Po [INFO] [stderr] rm -f libfreesasa.a [INFO] [stderr] ar cru libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o [INFO] [stderr] ranlib libfreesasa.a [INFO] [stderr] cc -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -o example example.o libfreesasa.a -ldl -lm [INFO] [stderr] mv -f .deps/main.Tpo .deps/main.Po [INFO] [stderr] mv -f .deps/cif.Tpo .deps/cif.Po [INFO] [stderr] c++ -std=gnu++14 -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -o freesasa main.o cif.o -lc++ libfreesasa.a -ldl -lm [INFO] [stderr] make[1]: Leaving directory '/opt/rustwide/target/debug/build/freesasa-sys-bf721c551c80b7a8/out/build/src' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] configure.ac:42: warning: The macro `AC_PROG_CC_C99' is obsolete. [INFO] [stderr] configure.ac:42: You should run autoupdate. [INFO] [stderr] ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... [INFO] [stderr] configure.ac:42: the top level [INFO] [stderr] configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete [INFO] [stderr] ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... [INFO] [stderr] ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... [INFO] [stderr] configure.ac:123: the top level [INFO] [stderr] configure.ac:16: installing './compile' [INFO] [stderr] configure.ac:46: installing './config.guess' [INFO] [stderr] configure.ac:46: installing './config.sub' [INFO] [stderr] configure.ac:6: installing './install-sh' [INFO] [stderr] configure.ac:6: installing './missing' [INFO] [stderr] src/Makefile.am: installing './depcomp' [INFO] [stderr] parallel-tests: installing './test-driver' [INFO] [stderr] configure: WARNING: unrecognized options: --disable-shared, --enable-static [INFO] [stderr] configure: WARNING: unrecognized options: --disable-shared, --enable-static [INFO] [stderr] make: warning: -j8 forced in submake: resetting jobserver mode. [INFO] [stderr] ar: `u' modifier ignored since `D' is the default (see `U') [INFO] [stderr] /usr/bin/ld: cannot find -lc++: No such file or directory [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] make[1]: *** [Makefile:521: freesasa] Error 1 [INFO] [stderr] make: *** [Makefile:391: install-recursive] Error 1 [INFO] [stderr] [INFO] [stderr] thread 'main' (628) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/autotools-0.2.7/src/lib.rs:790:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a41e825582 - std::backtrace_rs::backtrace::libunwind::trace::h7cddb8376417e7cc [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x55a41e825582 - std::backtrace_rs::backtrace::trace_unsynchronized::hb4e41acf4b349ff1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x55a41e825582 - std::sys::backtrace::_print_fmt::h1222b80910ba6eb5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x55a41e825582 - ::fmt::h5bb8a979ba5db788 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x55a41e83680f - core::fmt::rt::Argument::fmt::h2ee2c138a50a7796 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x55a41e83680f - core::fmt::write::h1e0dbf07fe3990bd [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x55a41e7f3843 - std::io::default_write_fmt::hb0810a37865e52a5 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x55a41e7f3843 - std::io::Write::write_fmt::h12c8908aaac7ca22 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x55a41e7ffbf2 - std::sys::backtrace::BacktraceLock::print::h788d486777205086 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x55a41e802d0f - std::panicking::default_hook::{{closure}}::ha7bdfeb5949fc0fa [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x55a41e802b69 - std::panicking::default_hook::h6dad75ec721846f4 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x55a41e803395 - std::panicking::panic_with_hook::hba00e869ada17676 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x55a41e80317a - std::panicking::panic_handler::{{closure}}::h3d21149c258e5ceb [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x55a41e7ffd29 - std::sys::backtrace::__rust_end_short_backtrace::h4f5d9b9dfb3e6ec1 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x55a41e7e735d - __rustc[9a7a9f9af7564de1]::rust_begin_unwind [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x55a41e840710 - core::panicking::panic_fmt::h78e817a90331d98b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x55a41e78342b - autotools::fail::h98e4a57aab26e546 [INFO] [stderr] 17: 0x55a41e786778 - autotools::Config::build::he7c354e02709730b [INFO] [stderr] 18: 0x55a41e23be2f - build_script_build::main::h02320068e13d8eb7 [INFO] [stderr] 19: 0x55a41e23d6b3 - core::ops::function::FnOnce::call_once::ha7526d8247f1c714 [INFO] [stderr] 20: 0x55a41e23cf86 - std::sys::backtrace::__rust_begin_short_backtrace::h74ac4757fcfb41cd [INFO] [stderr] 21: 0x55a41e23ce59 - std::rt::lang_start::{{closure}}::h103a21911e30473f [INFO] [stderr] 22: 0x55a41e7f5260 - core::ops::function::impls:: for &F>::call_once::h1dc0a50e6295ec78 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 23: 0x55a41e7f5260 - std::panicking::catch_unwind::do_call::h209f742e9999044e [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 24: 0x55a41e7f5260 - std::panicking::catch_unwind::h508c6e2aa6d72749 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 25: 0x55a41e7f5260 - std::panic::catch_unwind::hebcbb24aa9914693 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x55a41e7f5260 - std::rt::lang_start_internal::{{closure}}::h703cbe32967ef209 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x55a41e7f5260 - std::panicking::catch_unwind::do_call::hf50f2a30bce4e10b [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stderr] 28: 0x55a41e7f5260 - std::panicking::catch_unwind::hac448d7e3b12daa3 [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stderr] 29: 0x55a41e7f5260 - std::panic::catch_unwind::ha9d74a13d77f299c [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x55a41e7f5260 - std::rt::lang_start_internal::ha26d244788d1956d [INFO] [stderr] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x55a41e23ce41 - std::rt::lang_start::h50db730b610a9547 [INFO] [stderr] 32: 0x55a41e2457d5 - main [INFO] [stderr] 33: 0x7b201d5581ca - [INFO] [stderr] 34: 0x7b201d55828b - __libc_start_main [INFO] [stderr] 35: 0x55a41e23b3d5 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "e5c96030492afe2895153a915e4632f3fb3671be084fb28aff7d427891977815", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e5c96030492afe2895153a915e4632f3fb3671be084fb28aff7d427891977815", kill_on_drop: false }` [INFO] [stdout] e5c96030492afe2895153a915e4632f3fb3671be084fb28aff7d427891977815