[INFO] fetching crate fasten 0.8.7... [INFO] testing fasten-0.8.7 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate fasten 0.8.7 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate fasten 0.8.7 [INFO] finished tweaking crates.io crate fasten 0.8.7 [INFO] tweaked toml for crates.io crate fasten 0.8.7 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate fasten 0.8.7 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate fasten 0.8.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fastq v0.6.0 [INFO] [stderr] Downloaded bam v0.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2b86e7d6c5558584439813c4146886fdc02cd0bcb90208b803a27f928133f74b [INFO] running `Command { std: "docker" "start" "-a" "2b86e7d6c5558584439813c4146886fdc02cd0bcb90208b803a27f928133f74b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2b86e7d6c5558584439813c4146886fdc02cd0bcb90208b803a27f928133f74b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b86e7d6c5558584439813c4146886fdc02cd0bcb90208b803a27f928133f74b", kill_on_drop: false }` [INFO] [stdout] 2b86e7d6c5558584439813c4146886fdc02cd0bcb90208b803a27f928133f74b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 90d801f7e7cd7c6fc77c7aa92536111b9308f1b4ddf1ee761eb60b74342b1ee1 [INFO] running `Command { std: "docker" "start" "-a" "90d801f7e7cd7c6fc77c7aa92536111b9308f1b4ddf1ee761eb60b74342b1ee1", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling libc v0.2.149 [INFO] [stderr] Compiling autocfg v0.1.8 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling owning_ref v0.2.4 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling smallvec v0.3.4 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling getrandom v0.2.10 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling time v0.1.45 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling parking_lot_core v0.2.14 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling parking_lot v0.3.8 [INFO] [stderr] Compiling libz-sys v1.1.12 [INFO] [stderr] Compiling lz4-sys v1.9.4 [INFO] [stderr] Compiling num v0.2.1 [INFO] [stderr] Compiling multiqueue v0.3.2 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling statistical v1.0.0 [INFO] [stderr] Compiling bam v0.1.4 [INFO] [stderr] Compiling fancy-regex v0.13.0 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling lz4 v1.24.0 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling fasten v0.8.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 32.65s [INFO] running `Command { std: "docker" "inspect" "90d801f7e7cd7c6fc77c7aa92536111b9308f1b4ddf1ee761eb60b74342b1ee1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90d801f7e7cd7c6fc77c7aa92536111b9308f1b4ddf1ee761eb60b74342b1ee1", kill_on_drop: false }` [INFO] [stdout] 90d801f7e7cd7c6fc77c7aa92536111b9308f1b4ddf1ee761eb60b74342b1ee1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d44544e3a9780ef231257163ada2563f40db503a9885d82ccf24955737344c43 [INFO] running `Command { std: "docker" "start" "-a" "d44544e3a9780ef231257163ada2563f40db503a9885d82ccf24955737344c43", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling fasten v0.8.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.19s [INFO] running `Command { std: "docker" "inspect" "d44544e3a9780ef231257163ada2563f40db503a9885d82ccf24955737344c43", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d44544e3a9780ef231257163ada2563f40db503a9885d82ccf24955737344c43", kill_on_drop: false }` [INFO] [stdout] d44544e3a9780ef231257163ada2563f40db503a9885d82ccf24955737344c43 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4ad9462c590a144655c66f7c4921ed722acd31e88b742dd8bc5b6f002fad4bac [INFO] running `Command { std: "docker" "start" "-a" "4ad9462c590a144655c66f7c4921ed722acd31e88b742dd8bc5b6f002fad4bac", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fasten-aa44581878a0b456) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test io::seq::test_cleanable ... ok [INFO] [stdout] test io::seq::test_new_seq ... ok [INFO] [stdout] test io::fastq::test_the_fast_reader ... ok [INFO] [stdout] test io::fastq::test_the_careful_reader ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_clean.rs (/opt/rustwide/target/debug/deps/fasten_clean-f5137dbab46da207) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_combine.rs (/opt/rustwide/target/debug/deps/fasten_combine-6db9159c99f1b515) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_convert.rs (/opt/rustwide/target/debug/deps/fasten_convert-a6e5b7cbb998eb75) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_inspect.rs (/opt/rustwide/target/debug/deps/fasten_inspect-dc0c497c51d80ed8) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_kmer.rs (/opt/rustwide/target/debug/deps/fasten_kmer-01bd4fd561a78e00) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_kmer_counting_homopolymers ... ok [INFO] [stdout] test test_kmer_counting_4mers ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_metrics.rs (/opt/rustwide/target/debug/deps/fasten_metrics-84d71708a99465a3) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_average_quality ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_mutate.rs (/opt/rustwide/target/debug/deps/fasten_mutate-17302d3ffd860597) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_normalize.rs (/opt/rustwide/target/debug/deps/fasten_normalize-8429132639c8a4fb) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_pe.rs (/opt/rustwide/target/debug/deps/fasten_pe-854cd9e16a3420f2) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_progress.rs (/opt/rustwide/target/debug/deps/fasten_progress-4c9cfb8a98be6016) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_quality_filter.rs (/opt/rustwide/target/debug/deps/fasten_quality_filter-30036eab44999115) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_randomize.rs (/opt/rustwide/target/debug/deps/fasten_randomize-19f8de11830f77b3) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stderr] Running unittests src/bin/fasten_regex.rs (/opt/rustwide/target/debug/deps/fasten_regex-ce314454ae2aa14e) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_repair.rs (/opt/rustwide/target/debug/deps/fasten_repair-db4f23da29f7391d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/bin/fasten_replace.rs (/opt/rustwide/target/debug/deps/fasten_replace-559c3a79cbd497c4) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sample.rs (/opt/rustwide/target/debug/deps/fasten_sample-ec07eef349311778) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/bin/fasten_shuffle.rs (/opt/rustwide/target/debug/deps/fasten_shuffle-92e638f1be038ae9) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sort.rs (/opt/rustwide/target/debug/deps/fasten_sort-f2379ea9a953d8fa) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_straighten.rs (/opt/rustwide/target/debug/deps/fasten_straighten-956bfe0c8ef484cc) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_sort_fastq_basic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test challenge_dataset ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_trim.rs (/opt/rustwide/target/debug/deps/fasten_trim-ce09bd6c8bdb5c30) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_validate.rs (/opt/rustwide/target/debug/deps/fasten_validate-77549752d591c23d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests fasten [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4ad9462c590a144655c66f7c4921ed722acd31e88b742dd8bc5b6f002fad4bac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4ad9462c590a144655c66f7c4921ed722acd31e88b742dd8bc5b6f002fad4bac", kill_on_drop: false }` [INFO] [stdout] 4ad9462c590a144655c66f7c4921ed722acd31e88b742dd8bc5b6f002fad4bac