[INFO] fetching crate exon-py 0.11.0...
[INFO] testing exon-py-0.11.0 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1
[INFO] extracting crate exon-py 0.11.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate exon-py 0.11.0
[INFO] finished tweaking crates.io crate exon-py 0.11.0
[INFO] tweaked toml for crates.io crate exon-py 0.11.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate exon-py 0.11.0 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 466 packages to latest compatible versions
[INFO] [stderr]       Adding arrow v50.0.0 (available: v56.1.0)
[INFO] [stderr]       Adding async-compression v0.4.19 (available: v0.4.30)
[INFO] [stderr]       Adding datafusion v36.0.0 (available: v49.0.2)
[INFO] [stderr]       Adding exon v0.11.1 (available: v0.32.4)
[INFO] [stderr]       Adding pyo3 v0.20.3 (available: v0.26.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.14.0
[INFO] [stderr]   Downloaded noodles v0.65.0
[INFO] [stderr]   Downloaded noodles-tabix v0.36.0
[INFO] [stderr]   Downloaded exon-bcf v0.11.1
[INFO] [stderr]   Downloaded exon-bed v0.11.1
[INFO] [stderr]   Downloaded datafusion-execution v36.0.0
[INFO] [stderr]   Downloaded exon-gff v0.11.1
[INFO] [stderr]   Downloaded exon-bam v0.11.1
[INFO] [stderr]   Downloaded exon-fastq v0.11.1
[INFO] [stderr]   Downloaded err-derive v0.3.1
[INFO] [stderr]   Downloaded gb-io v0.7.1
[INFO] [stderr]   Downloaded datafusion-sql v36.0.0
[INFO] [stderr]   Downloaded datafusion-common v36.0.0
[INFO] [stderr]   Downloaded arrow v50.0.0
[INFO] [stderr]   Downloaded datafusion-optimizer v36.0.0
[INFO] [stderr]   Downloaded noodles-cram v0.56.0
[INFO] [stderr]   Downloaded datafusion-physical-plan v36.0.0
[INFO] [stderr]   Downloaded datafusion-expr v36.0.0
[INFO] [stderr]   Downloaded arrow-cast v50.0.0
[INFO] [stderr]   Downloaded arrow-ipc v50.0.0
[INFO] [stderr]   Downloaded comfy-table v7.2.0
[INFO] [stderr]   Downloaded arrow-array v50.0.0
[INFO] [stderr]   Downloaded sqlparser v0.43.1
[INFO] [stderr]   Downloaded parquet v50.0.0
[INFO] [stderr]   Downloaded datafusion v36.0.0
[INFO] [stderr]   Downloaded noodles-bam v0.56.0
[INFO] [stderr]   Downloaded object_store v0.9.1
[INFO] [stderr]   Downloaded datafusion-physical-expr v36.0.0
[INFO] [stderr]   Downloaded arrow-data v50.0.0
[INFO] [stderr]   Downloaded noodles-bcf v0.46.0
[INFO] [stderr]   Downloaded noodles-fastq v0.10.0
[INFO] [stderr]   Downloaded arrow-json v50.0.0
[INFO] [stderr]   Downloaded arrow-row v50.0.0
[INFO] [stderr]   Downloaded arrow-buffer v50.0.0
[INFO] [stderr]   Downloaded arrow-schema v50.0.0
[INFO] [stderr]   Downloaded arrow-select v50.0.0
[INFO] [stderr]   Downloaded noodles-bed v0.12.0
[INFO] [stderr]   Downloaded noodles-fasta v0.33.0
[INFO] [stderr]   Downloaded noodles-gtf v0.23.0
[INFO] [stderr]   Downloaded exon-mzml v0.11.1
[INFO] [stderr]   Downloaded exon-sam v0.11.1
[INFO] [stderr]   Downloaded arrow-ord v50.0.0
[INFO] [stderr]   Downloaded exon-vcf v0.11.1
[INFO] [stderr]   Downloaded arrow-csv v50.0.0
[INFO] [stderr]   Downloaded exon-common v0.11.1
[INFO] [stderr]   Downloaded noodles-sam v0.53.0
[INFO] [stderr]   Downloaded exon-genbank v0.11.1
[INFO] [stderr]   Downloaded exon-io v0.11.1
[INFO] [stderr]   Downloaded datafusion-functions-array v36.0.0
[INFO] [stderr]   Downloaded noodles-gff v0.27.0
[INFO] [stderr]   Downloaded datafusion-functions v36.0.0
[INFO] [stderr]   Downloaded arrow-string v50.0.0
[INFO] [stderr]   Downloaded sqlparser_derive v0.2.2
[INFO] [stderr]   Downloaded exon v0.11.1
[INFO] [stderr]   Downloaded arrow-arith v50.0.0
[INFO] [stderr]   Downloaded noodles-csi v0.30.0
[INFO] [stderr]   Downloaded exon-gtf v0.11.1
[INFO] [stderr]   Downloaded noodles-vcf v0.49.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.26.0
[INFO] [stderr]   Downloaded exon-fasta v0.11.1
[INFO] [stderr]   Downloaded exon-fcs v0.11.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] aa31a6937a832d67a1f4f3f6dffb94b8bb29f8250d13df7494f943cd2b1c3b5d
[INFO] running `Command { std: "docker" "start" "-a" "aa31a6937a832d67a1f4f3f6dffb94b8bb29f8250d13df7494f943cd2b1c3b5d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa31a6937a832d67a1f4f3f6dffb94b8bb29f8250d13df7494f943cd2b1c3b5d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa31a6937a832d67a1f4f3f6dffb94b8bb29f8250d13df7494f943cd2b1c3b5d", kill_on_drop: false }`
[INFO] [stdout] aa31a6937a832d67a1f4f3f6dffb94b8bb29f8250d13df7494f943cd2b1c3b5d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7f2c7730ba5f7118c373b02fcf1e472fcbd4517c27220b0ef09127620b30473a
[INFO] running `Command { std: "docker" "start" "-a" "7f2c7730ba5f7118c373b02fcf1e472fcbd4517c27220b0ef09127620b30473a", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling http-body v0.4.6
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling subtle v2.6.1
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling arrow-schema v50.0.0
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling potential_utf v0.1.3
[INFO] [stderr]    Compiling icu_collections v2.0.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling comfy-table v7.2.0
[INFO] [stderr]    Compiling cc v1.2.34
[INFO] [stderr]    Compiling socket2 v0.5.10
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling tokio v1.47.1
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling icu_properties v2.0.1
[INFO] [stderr]    Compiling serde_json v1.0.143
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling rustls-pemfile v1.0.4
[INFO] [stderr]    Compiling flatbuffers v23.5.26
[INFO] [stderr]    Compiling pyo3-build-config v0.20.3
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rustls-native-certs v0.6.3
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling twox-hash v2.1.1
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling half v2.6.0
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling alloc-no-stdlib v2.0.4
[INFO] [stderr]    Compiling alloc-stdlib v0.2.2
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling lz4_flex v0.11.5
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling url v2.5.7
[INFO] [stderr]    Compiling md-5 v0.10.6
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.20.3
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling brotli-decompressor v2.5.1
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling pyo3-ffi v0.20.3
[INFO] [stderr]    Compiling futures-executor v0.3.31
[INFO] [stderr]    Compiling pyo3 v0.20.3
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling futures v0.3.31
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling ordered-float v2.10.1
[INFO] [stderr]    Compiling arrow-buffer v50.0.0
[INFO] [stderr]    Compiling integer-encoding v3.0.4
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling brotli v3.5.0
[INFO] [stderr]    Compiling twox-hash v1.6.3
[INFO] [stderr]    Compiling chrono-tz-build v0.2.1
[INFO] [stderr]    Compiling arrow-data v50.0.0
[INFO] [stderr]    Compiling tokio-util v0.7.16
[INFO] [stderr]    Compiling quick-xml v0.31.0
[INFO] [stderr]    Compiling thrift v0.17.0
[INFO] [stderr]    Compiling sqlparser_derive v0.2.2
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling chrono-tz v0.8.6
[INFO] [stderr]    Compiling h2 v0.3.27
[INFO] [stderr]    Compiling libdeflate-sys v1.24.0
[INFO] [stderr]    Compiling uuid v1.18.0
[INFO] [stderr]    Compiling sqlparser v0.43.1
[INFO] [stderr]    Compiling rustix v1.0.8
[INFO] [stderr]    Compiling snafu-derive v0.7.5
[INFO] [stderr]    Compiling pyo3-macros v0.20.3
[INFO] [stderr]    Compiling dashmap v5.5.3
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling noodles-core v0.14.0
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-3.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "default", "disable-timer", "external-literal-probability", "ffi-api", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=9a63fd5c89d01b4c -C extra-filename=-fccb9ce38319a1da --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-06c983927188c99c.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-be9175862277e1f4.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-24ee79edf4d8af6d.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `tokio` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/bin/rustc --crate-name tokio --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/tokio-1.47.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --warn=unexpected_cfgs --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(loom)' --check-cfg 'cfg(mio_unsupported_force_poll_poll)' --check-cfg 'cfg(tokio_allow_from_blocking_fd)' --check-cfg 'cfg(tokio_internal_mt_counters)' --check-cfg 'cfg(tokio_no_parking_lot)' --check-cfg 'cfg(tokio_no_tuning_tests)' --check-cfg 'cfg(tokio_taskdump)' --check-cfg 'cfg(tokio_unstable)' --check-cfg 'cfg(tokio_uring)' --check-cfg 'cfg(target_os, values("cygwin"))' --cfg 'feature="bytes"' --cfg 'feature="default"' --cfg 'feature="fs"' --cfg 'feature="full"' --cfg 'feature="io-std"' --cfg 'feature="io-util"' --cfg 'feature="libc"' --cfg 'feature="macros"' --cfg 'feature="mio"' --cfg 'feature="net"' --cfg 'feature="parking_lot"' --cfg 'feature="process"' --cfg 'feature="rt"' --cfg 'feature="rt-multi-thread"' --cfg 'feature="signal"' --cfg 'feature="signal-hook-registry"' --cfg 'feature="socket2"' --cfg 'feature="sync"' --cfg 'feature="time"' --cfg 'feature="tokio-macros"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytes", "default", "fs", "full", "io-std", "io-util", "libc", "macros", "mio", "net", "parking_lot", "process", "rt", "rt-multi-thread", "signal", "signal-hook-registry", "socket2", "sync", "test-util", "time", "tokio-macros", "tracing", "windows-sys"))' -C metadata=1d9ce8a087a02020 -C extra-filename=-6f9ce5c648524167 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bytes=/opt/rustwide/target/debug/deps/libbytes-bfe11088fe358bd1.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-a58beeab2e1413cc.rmeta --extern mio=/opt/rustwide/target/debug/deps/libmio-42cc619f1990aa9e.rmeta --extern parking_lot=/opt/rustwide/target/debug/deps/libparking_lot-716158612cdfffaf.rmeta --extern pin_project_lite=/opt/rustwide/target/debug/deps/libpin_project_lite-bedc6e0acd72ff2a.rmeta --extern signal_hook_registry=/opt/rustwide/target/debug/deps/libsignal_hook_registry-dc432a6cbbcb6361.rmeta --extern socket2=/opt/rustwide/target/debug/deps/libsocket2-3ed8ac1c6dcd3fb1.rmeta --extern tokio_macros=/opt/rustwide/target/debug/deps/libtokio_macros-c9a065b4e9dbd546.so --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "7f2c7730ba5f7118c373b02fcf1e472fcbd4517c27220b0ef09127620b30473a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f2c7730ba5f7118c373b02fcf1e472fcbd4517c27220b0ef09127620b30473a", kill_on_drop: false }`
[INFO] [stdout] 7f2c7730ba5f7118c373b02fcf1e472fcbd4517c27220b0ef09127620b30473a