[INFO] fetching crate exon-bcf 0.32.4... [INFO] testing exon-bcf-0.32.4 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate exon-bcf 0.32.4 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate exon-bcf 0.32.4 [INFO] finished tweaking crates.io crate exon-bcf 0.32.4 [INFO] tweaked toml for crates.io crate exon-bcf 0.32.4 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate exon-bcf 0.32.4 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 302 packages to latest compatible versions [INFO] [stderr] Adding arrow v53.4.1 (available: v56.1.0) [INFO] [stderr] Adding async-compression v0.4.19 (available: v0.4.30) [INFO] [stderr] Adding chrono v0.4.39 (available: v0.4.41) [INFO] [stderr] Adding noodles v0.86.0 (available: v0.101.0) [INFO] [stderr] Adding object_store v0.11.2 (available: v0.12.3) [INFO] [stderr] Adding zstd-safe v7.2.1 (available: v7.2.4) [INFO] [stderr] Adding zstd-sys v2.0.13+zstd.1.5.6 (available: v2.0.15+zstd.1.5.7) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-tabix v0.47.0 [INFO] [stderr] Downloaded noodles v0.86.0 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles-fastq v0.16.0 [INFO] [stderr] Downloaded exon-vcf v0.32.4 [INFO] [stderr] Downloaded noodles-csi v0.41.0 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded noodles-bam v0.71.0 [INFO] [stderr] Downloaded noodles-bcf v0.65.0 [INFO] [stderr] Downloaded noodles-cram v0.72.0 [INFO] [stderr] Downloaded noodles-sam v0.67.0 [INFO] [stderr] Downloaded noodles-vcf v0.69.0 [INFO] [stderr] Downloaded noodles-gff v0.40.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 669531960c5ed99590839eac4e70b5d5db537072873766ff0e9b685f8970ee27 [INFO] running `Command { std: "docker" "start" "-a" "669531960c5ed99590839eac4e70b5d5db537072873766ff0e9b685f8970ee27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "669531960c5ed99590839eac4e70b5d5db537072873766ff0e9b685f8970ee27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "669531960c5ed99590839eac4e70b5d5db537072873766ff0e9b685f8970ee27", kill_on_drop: false }` [INFO] [stdout] 669531960c5ed99590839eac4e70b5d5db537072873766ff0e9b685f8970ee27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4df26efab42e39807568b61e8408944eecbbf10b8b3f4e677219943dd0d73cc2 [INFO] running `Command { std: "docker" "start" "-a" "4df26efab42e39807568b61e8408944eecbbf10b8b3f4e677219943dd0d73cc2", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling chrono-tz v0.10.4 [INFO] [stderr] Compiling arrow-schema v53.4.1 [INFO] [stderr] Compiling phf_shared v0.12.1 [INFO] [stderr] Compiling lexical-util v1.0.6 [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling tokio v1.47.1 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling flatbuffers v24.12.23 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling snafu-derive v0.8.8 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling phf v0.12.1 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling brotli-decompressor v4.0.3 [INFO] [stderr] Compiling comfy-table v7.2.0 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling sqlparser_derive v0.2.2 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling lexical-write-integer v1.0.5 [INFO] [stderr] Compiling lexical-parse-integer v1.0.5 [INFO] [stderr] Compiling lexical-parse-float v1.0.5 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling lexical-write-float v1.0.5 [INFO] [stderr] Compiling sqlparser v0.51.0 [INFO] [stderr] Compiling linux-raw-sys v0.9.4 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling dashmap v6.1.0 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling lexical-core v1.0.5 [INFO] [stderr] Compiling brotli v7.0.0 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling half v2.6.0 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling futures-executor v0.3.31 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling snafu v0.8.8 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling blake3 v1.8.2 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling constant_time_eq v0.3.1 [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling arrayref v0.3.9 [INFO] [stderr] Compiling sha2 v0.10.9 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling blake2 v0.10.6 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling tempfile v3.21.0 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling uuid v1.18.0 [INFO] [stderr] Compiling bzip2 v0.5.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling object_store v0.11.2 [INFO] [stderr] Compiling tokio-util v0.7.16 [INFO] [stderr] Compiling datafusion-common-runtime v43.0.0 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling arrow-buffer v53.4.1 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling arrow-data v53.4.1 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling noodles-tabix v0.47.0 [INFO] [stderr] Compiling noodles-vcf v0.69.0 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling async-compression v0.4.19 [INFO] [stderr] Compiling noodles-bcf v0.65.0 [INFO] [stderr] Compiling noodles v0.86.0 [INFO] [stderr] Compiling arrow-array v53.4.1 [INFO] [stderr] Compiling arrow-select v53.4.1 [INFO] [stderr] Compiling arrow-row v53.4.1 [INFO] [stderr] Compiling arrow-arith v53.4.1 [INFO] [stderr] Compiling arrow-cast v53.4.1 [INFO] [stderr] Compiling arrow-ord v53.4.1 [INFO] [stderr] Compiling arrow-string v53.4.1 [INFO] [stderr] Compiling arrow-ipc v53.4.1 [INFO] [stderr] Compiling arrow-csv v53.4.1 [INFO] [stderr] Compiling arrow-json v53.4.1 [INFO] [stderr] Compiling arrow v53.4.1 [INFO] [stderr] Compiling parquet v53.4.1 [INFO] [stderr] Compiling datafusion-common v43.0.0 [INFO] [stderr] Compiling datafusion-expr-common v43.0.0 [INFO] [stderr] Compiling datafusion-physical-expr-common v43.0.0 [INFO] [stderr] Compiling datafusion-functions-aggregate-common v43.0.0 [INFO] [stderr] Compiling datafusion-functions-window-common v43.0.0 [INFO] [stderr] Compiling datafusion-expr v43.0.0 [INFO] [stderr] Compiling datafusion-physical-expr v43.0.0 [INFO] [stderr] Compiling datafusion-execution v43.0.0 [INFO] [stderr] Compiling datafusion-sql v43.0.0 [INFO] [stderr] Compiling datafusion-functions v43.0.0 [INFO] [stderr] Compiling datafusion-physical-plan v43.0.0 [INFO] [stderr] Compiling datafusion-functions-aggregate v43.0.0 [INFO] [stderr] Compiling datafusion-functions-window v43.0.0 [INFO] [stderr] Compiling datafusion-optimizer v43.0.0 [INFO] [stderr] Compiling datafusion-functions-nested v43.0.0 [INFO] [stderr] Compiling datafusion-physical-optimizer v43.0.0 [INFO] [stderr] Compiling datafusion-catalog v43.0.0 [INFO] [stderr] Compiling datafusion v43.0.0 [INFO] [stderr] Compiling exon-common v0.32.4 [INFO] [stderr] Compiling exon-vcf v0.32.4 [INFO] [stderr] Compiling exon-bcf v0.32.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 56s [INFO] running `Command { std: "docker" "inspect" "4df26efab42e39807568b61e8408944eecbbf10b8b3f4e677219943dd0d73cc2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4df26efab42e39807568b61e8408944eecbbf10b8b3f4e677219943dd0d73cc2", kill_on_drop: false }` [INFO] [stdout] 4df26efab42e39807568b61e8408944eecbbf10b8b3f4e677219943dd0d73cc2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4579f546a474105d0b4ee5b021d729d60bf1b7a2d7358b70d6ff8c764ae1b48d [INFO] running `Command { std: "docker" "start" "-a" "4579f546a474105d0b4ee5b021d729d60bf1b7a2d7358b70d6ff8c764ae1b48d", kill_on_drop: false }` [INFO] [stderr] Compiling exon-bcf v0.32.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.66s [INFO] running `Command { std: "docker" "inspect" "4579f546a474105d0b4ee5b021d729d60bf1b7a2d7358b70d6ff8c764ae1b48d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4579f546a474105d0b4ee5b021d729d60bf1b7a2d7358b70d6ff8c764ae1b48d", kill_on_drop: false }` [INFO] [stdout] 4579f546a474105d0b4ee5b021d729d60bf1b7a2d7358b70d6ff8c764ae1b48d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2e7b93db798b31b0ed0ae12f4732ff6a66e05979df8f8a0697ff1f2b86b2cd31 [INFO] running `Command { std: "docker" "start" "-a" "2e7b93db798b31b0ed0ae12f4732ff6a66e05979df8f8a0697ff1f2b86b2cd31", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/exon_bcf-16dbb851bd8e59b0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stderr] Doc-tests exon_bcf [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2e7b93db798b31b0ed0ae12f4732ff6a66e05979df8f8a0697ff1f2b86b2cd31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2e7b93db798b31b0ed0ae12f4732ff6a66e05979df8f8a0697ff1f2b86b2cd31", kill_on_drop: false }` [INFO] [stdout] 2e7b93db798b31b0ed0ae12f4732ff6a66e05979df8f8a0697ff1f2b86b2cd31