[INFO] fetching crate deepbiop-fa 0.1.15... [INFO] testing deepbiop-fa-0.1.15 against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] extracting crate deepbiop-fa 0.1.15 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate deepbiop-fa 0.1.15 [INFO] finished tweaking crates.io crate deepbiop-fa 0.1.15 [INFO] tweaked toml for crates.io crate deepbiop-fa 0.1.15 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate deepbiop-fa 0.1.15 on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate deepbiop-fa 0.1.15 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.52 [INFO] [stderr] Downloaded thrift v0.17.0 [INFO] [stderr] Downloaded inventory v0.3.17 [INFO] [stderr] Downloaded arrow-schema v54.0.0 [INFO] [stderr] Downloaded pyo3-stub-gen-derive v0.6.2 [INFO] [stderr] Downloaded arrow-select v54.0.0 [INFO] [stderr] Downloaded pyo3-stub-gen v0.6.2 [INFO] [stderr] Downloaded reborrow v0.5.5 [INFO] [stderr] Downloaded arrow-data v54.0.0 [INFO] [stderr] Downloaded gemm-c32 v0.17.1 [INFO] [stderr] Downloaded gemm-f64 v0.17.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded arrow-csv v54.0.0 [INFO] [stderr] Downloaded arrow-json v54.0.0 [INFO] [stderr] Downloaded parquet v54.0.0 [INFO] [stderr] Downloaded noodles-bam v0.72.0 [INFO] [stderr] Downloaded arrow-ipc v54.0.0 [INFO] [stderr] Downloaded arrow-array v54.0.0 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded arrow-ord v54.0.0 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded pulp v0.18.22 [INFO] [stderr] Downloaded arrow-row v54.0.0 [INFO] [stderr] Downloaded arrow-string v54.0.0 [INFO] [stderr] Downloaded liblzma-sys v0.3.11 [INFO] [stderr] Downloaded candle-core v0.8.2 [INFO] [stderr] Downloaded zip v1.1.4 [INFO] [stderr] Downloaded noodles-sam v0.68.0 [INFO] [stderr] Downloaded arrow v54.0.0 [INFO] [stderr] Downloaded arrow-cast v54.0.0 [INFO] [stderr] Downloaded deepbiop-utils v0.1.15 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded arrow-arith v54.0.0 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded noodles-fastq v0.16.0 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded gemm-f16 v0.17.1 [INFO] [stderr] Downloaded dyn-stack v0.10.0 [INFO] [stderr] Downloaded safetensors v0.4.5 [INFO] [stderr] Downloaded noodles v0.87.0 [INFO] [stderr] Downloaded gemm v0.17.1 [INFO] [stderr] Downloaded liblzma v0.3.5 [INFO] [stderr] Downloaded needletail v0.6.1 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded noodles-csi v0.41.0 [INFO] [stderr] Downloaded arrow-buffer v54.0.0 [INFO] [stderr] Downloaded libz-ng-sys v1.1.21 [INFO] [stderr] Downloaded gemm-c64 v0.17.1 [INFO] [stderr] Downloaded gemm-f32 v0.17.1 [INFO] [stderr] Downloaded gemm-common v0.17.1 [INFO] [stderr] Downloaded ug v0.0.2 [INFO] [stderr] Downloaded sysctl v0.5.5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c04078cbf2065f65a023ef1ea69ac5ed4d3c093a955383d5620fa7fb4fba4a99 [INFO] running `Command { std: "docker" "start" "-a" "c04078cbf2065f65a023ef1ea69ac5ed4d3c093a955383d5620fa7fb4fba4a99", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c04078cbf2065f65a023ef1ea69ac5ed4d3c093a955383d5620fa7fb4fba4a99", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c04078cbf2065f65a023ef1ea69ac5ed4d3c093a955383d5620fa7fb4fba4a99", kill_on_drop: false }` [INFO] [stdout] c04078cbf2065f65a023ef1ea69ac5ed4d3c093a955383d5620fa7fb4fba4a99 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 15d9b5fd5310e7399bec743a7469a1bf4801132f0c0c58dc995cc76c9f0760f6 [INFO] running `Command { std: "docker" "start" "-a" "15d9b5fd5310e7399bec743a7469a1bf4801132f0c0c58dc995cc76c9f0760f6", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling bytes v1.9.0 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling indexmap v2.7.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.2.10 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling lexical-util v1.0.6 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling pyo3-build-config v0.23.4 [INFO] [stderr] Compiling arrow-schema v54.0.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling lexical-write-integer v1.0.5 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling lexical-parse-integer v1.0.5 [INFO] [stderr] Compiling lexical-write-float v1.0.5 [INFO] [stderr] Compiling lexical-parse-float v1.0.5 [INFO] [stderr] Compiling libz-ng-sys v1.1.21 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling miniz_oxide v0.8.3 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling lexical-core v1.0.5 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Compiling winnow v0.6.24 [INFO] [stderr] Compiling semver v1.0.25 [INFO] [stderr] Compiling reborrow v0.5.5 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling raw-cpuid v10.7.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.23.4 [INFO] [stderr] Compiling pyo3-ffi v0.23.4 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.14 [INFO] [stderr] Compiling bstr v1.11.3 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling flatbuffers v24.12.23 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling toml_datetime v0.6.8 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling bitflags v2.8.0 [INFO] [stderr] Compiling toml_edit v0.22.22 [INFO] [stderr] Compiling pyo3 v0.23.4 [INFO] [stderr] Compiling liblzma-sys v0.3.11 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling darling_core v0.20.10 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling alloc-no-stdlib v2.0.4 [INFO] [stderr] Compiling alloc-stdlib v0.2.2 [INFO] [stderr] Compiling bytemuck_derive v1.8.1 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling dyn-stack v0.10.0 [INFO] [stderr] Compiling darling_macro v0.20.10 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling pulp v0.18.22 [INFO] [stderr] Compiling darling v0.20.10 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling proc-macro-crate v3.2.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling pyo3-macros v0.23.4 [INFO] [stderr] Compiling half v2.4.1 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling arrow-buffer v54.0.0 [INFO] [stderr] Compiling gemm-common v0.17.1 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling arrow-data v54.0.0 [INFO] [stderr] Compiling unindent v0.2.3 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling gemm-f32 v0.17.1 [INFO] [stderr] Compiling num_enum_derive v0.7.3 [INFO] [stderr] Compiling arrow-array v54.0.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling derive_builder_core v0.20.2 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling brotli-decompressor v4.0.2 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling serde_json v1.0.137 [INFO] [stderr] Compiling serde_spanned v0.6.8 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling arrow-select v54.0.0 [INFO] [stderr] Compiling arrow-ipc v54.0.0 [INFO] [stderr] Compiling twox-hash v1.6.3 [INFO] [stderr] Compiling integer-encoding v3.0.4 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling rustc-hash v2.1.0 [INFO] [stderr] Compiling zip v1.1.4 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling arrow-cast v54.0.0 [INFO] [stderr] Compiling zstd v0.13.2 [INFO] [stderr] Compiling arrow-string v54.0.0 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling arrow-ord v54.0.0 [INFO] [stderr] Compiling numpy v0.23.0 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling arrow-json v54.0.0 [INFO] [stderr] Compiling noodles-sam v0.68.0 [INFO] [stderr] Compiling arrow-csv v54.0.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling toml v0.8.19 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling noodles-bam v0.72.0 [INFO] [stderr] Compiling lz4_flex v0.11.3 [INFO] [stderr] Compiling arrow-row v54.0.0 [INFO] [stderr] Compiling arrow-arith v54.0.0 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling brotli v7.0.0 [INFO] [stderr] Compiling derive_builder_macro v0.20.2 [INFO] [stderr] Compiling liblzma v0.3.5 [INFO] [stderr] Compiling num_enum v0.7.3 [INFO] [stderr] Compiling gemm-f16 v0.17.1 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling gemm-c64 v0.17.1 [INFO] [stderr] Compiling gemm-f64 v0.17.1 [INFO] [stderr] Compiling gemm-c32 v0.17.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling pyo3-stub-gen-derive v0.6.2 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling noodles-fastq v0.16.0 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling inventory v0.3.17 [INFO] [stderr] Compiling unicode-linebreak v0.1.5 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling smawk v0.3.2 [INFO] [stderr] Compiling thiserror v2.0.11 [INFO] [stderr] Compiling textwrap v0.16.1 [INFO] [stderr] Compiling tempfile v3.15.0 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling needletail v0.6.1 [INFO] [stderr] Compiling pyo3-stub-gen v0.6.2 [INFO] [stderr] Compiling noodles v0.87.0 [INFO] [stderr] Compiling parquet v54.0.0 [INFO] [stderr] Compiling gemm v0.17.1 [INFO] [stderr] Compiling derive_builder v0.20.2 [INFO] [stderr] Compiling arrow v54.0.0 [INFO] [stderr] Compiling memmap2 v0.9.5 [INFO] [stderr] Compiling safetensors v0.4.5 [INFO] [stderr] Compiling ug v0.0.2 [INFO] [stderr] Compiling thiserror-impl v2.0.11 [INFO] [stderr] Compiling lexical v7.0.4 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling candle-core v0.8.2 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling deepbiop-utils v0.1.15 [INFO] [stderr] Compiling deepbiop-fa v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 56s [INFO] running `Command { std: "docker" "inspect" "15d9b5fd5310e7399bec743a7469a1bf4801132f0c0c58dc995cc76c9f0760f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15d9b5fd5310e7399bec743a7469a1bf4801132f0c0c58dc995cc76c9f0760f6", kill_on_drop: false }` [INFO] [stdout] 15d9b5fd5310e7399bec743a7469a1bf4801132f0c0c58dc995cc76c9f0760f6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 57e2146bdad64ffefee296df9b1d469ea0802eb4f3f753a883eddd8e0d220a9d [INFO] running `Command { std: "docker" "start" "-a" "57e2146bdad64ffefee296df9b1d469ea0802eb4f3f753a883eddd8e0d220a9d", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling numpy v0.23.0 [INFO] [stderr] Compiling pyo3-stub-gen v0.6.2 [INFO] [stderr] Compiling bstr v1.11.3 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling arrow-csv v54.0.0 [INFO] [stderr] Compiling arrow-string v54.0.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling noodles-fastq v0.16.0 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling arrow v54.0.0 [INFO] [stderr] Compiling noodles-sam v0.68.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling noodles-bam v0.72.0 [INFO] [stderr] Compiling noodles v0.87.0 [INFO] [stderr] Compiling deepbiop-utils v0.1.15 [INFO] [stderr] Compiling deepbiop-fa v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 06s [INFO] running `Command { std: "docker" "inspect" "57e2146bdad64ffefee296df9b1d469ea0802eb4f3f753a883eddd8e0d220a9d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "57e2146bdad64ffefee296df9b1d469ea0802eb4f3f753a883eddd8e0d220a9d", kill_on_drop: false }` [INFO] [stdout] 57e2146bdad64ffefee296df9b1d469ea0802eb4f3f753a883eddd8e0d220a9d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 91ae5745e6d1759b88762bfa3d4ebf3529c4caa3c1f446f2530a9d85b8a20d29 [INFO] running `Command { std: "docker" "start" "-a" "91ae5745e6d1759b88762bfa3d4ebf3529c4caa3c1f446f2530a9d85b8a20d29", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.27s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_fa-3d66e53959c71db5) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test encode::record::tests::test_record_data_build ... ok [INFO] [stdout] test io::tests::test_read_noodle_records_from_fa ... ok [INFO] [stdout] test encode::parquet::tests::test_encode_fq_for_parquet ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- encode::parquet::tests::test_encode_fq_for_parquet stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'encode::parquet::tests::test_encode_fq_for_parquet' (17) panicked at src/encode/parquet.rs:203:61: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Read-only file system (os error 30) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: anyhow::error:: for anyhow::Error>::from [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.95/src/backtrace.rs:27:14 [INFO] [stdout] 1: as core::ops::try_trait::FromResidual>>::from_residual [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/result.rs:2174:27 [INFO] [stdout] 2: deepbiop_utils::io::parquet::write_parquet [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/deepbiop-utils-0.1.15/src/io/parquet.rs:16:16 [INFO] [stdout] 3: deepbiop_fa::encode::parquet::tests::test_encode_fq_for_parquet [INFO] [stdout] at ./src/encode/parquet.rs:203:9 [INFO] [stdout] 4: deepbiop_fa::encode::parquet::tests::test_encode_fq_for_parquet::{{closure}} [INFO] [stdout] at ./src/encode/parquet.rs:195:36 [INFO] [stdout] 5: core::ops::function::FnOnce::call_once [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 6: core::ops::function::FnOnce::call_once [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 7: test::__rust_begin_short_backtrace [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:663:18 [INFO] [stdout] 8: test::run_test_in_process::{{closure}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:686:74 [INFO] [stdout] 9: as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 10: std::panicking::catch_unwind::do_call [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stdout] 11: std::panicking::catch_unwind [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stdout] 12: std::panic::catch_unwind [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stdout] 13: test::run_test_in_process [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:686:27 [INFO] [stdout] 14: test::run_test::{{closure}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:607:43 [INFO] [stdout] 15: test::run_test::{{closure}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:637:41 [INFO] [stdout] 16: std::sys::backtrace::__rust_begin_short_backtrace [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 17: std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 18: as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 19: std::panicking::catch_unwind::do_call [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stdout] 20: std::panicking::catch_unwind [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stdout] 21: std::panic::catch_unwind [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stdout] 22: std::thread::Builder::spawn_unchecked_::{{closure}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 23: core::ops::function::FnOnce::call_once{{vtable.shim}} [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 24: as core::ops::function::FnOnce>::call_once [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 25: std::sys::pal::unix::thread::Thread::new::thread_start [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/pal/unix/thread.rs:118:17 [INFO] [stdout] 26: [INFO] [stdout] 27: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5679b483c822 - std::backtrace_rs::backtrace::libunwind::trace::h7cddb8376417e7cc [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5679b483c822 - std::backtrace_rs::backtrace::trace_unsynchronized::hb4e41acf4b349ff1 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5679b483c822 - std::sys::backtrace::_print_fmt::h1222b80910ba6eb5 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x5679b483c822 - ::fmt::h5bb8a979ba5db788 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x5679b484f9bf - core::fmt::rt::Argument::fmt::h2ee2c138a50a7796 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x5679b484f9bf - core::fmt::write::h1e0dbf07fe3990bd [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x5679b4808613 - std::io::default_write_fmt::h7d7ad5ed6a883d81 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5679b4808613 - std::io::Write::write_fmt::hc477d9325b345ece [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x5679b48147b2 - std::sys::backtrace::BacktraceLock::print::h788d486777205086 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x5679b4819bdf - std::panicking::default_hook::{{closure}}::ha7bdfeb5949fc0fa [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x5679b4819a71 - std::panicking::default_hook::h6dad75ec721846f4 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x5679b3ae39de - as core::ops::function::Fn>::call::h33799d04b0b96146 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x5679b3ae39de - test::test_main_with_exit_callback::{{closure}}::h880e31c829a2eb5d [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x5679b481a32e - as core::ops::function::Fn>::call::h5e1b8c652ea49180 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x5679b481a32e - std::panicking::panic_with_hook::hba00e869ada17676 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x5679b481a04a - std::panicking::panic_handler::{{closure}}::h3d21149c258e5ceb [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x5679b48148e9 - std::sys::backtrace::__rust_end_short_backtrace::h4f5d9b9dfb3e6ec1 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x5679b47fc80d - __rustc[9a7a9f9af7564de1]::rust_begin_unwind [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x5679b4858130 - core::panicking::panic_fmt::h78e817a90331d98b [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x5679b48573b6 - core::result::unwrap_failed::h3ce108722ad88f1e [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/result.rs:1852:5 [INFO] [stdout] 20: 0x5679b3aa9b97 - core::result::Result::unwrap::hbec7bc90acc36d43 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/result.rs:1223:23 [INFO] [stdout] 21: 0x5679b3aa9b97 - deepbiop_fa::encode::parquet::tests::test_encode_fq_for_parquet::h33978f5c2386dc20 [INFO] [stdout] at /opt/rustwide/workdir/src/encode/parquet.rs:203:61 [INFO] [stdout] 22: 0x5679b3aa9d57 - deepbiop_fa::encode::parquet::tests::test_encode_fq_for_parquet::{{closure}}::h6e865ba7d74e8361 [INFO] [stdout] at /opt/rustwide/workdir/src/encode/parquet.rs:195:36 [INFO] [stdout] 23: 0x5679b3a9ca96 - core::ops::function::FnOnce::call_once::h1f067ad824d44dc9 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 24: 0x5679b3ae37db - core::ops::function::FnOnce::call_once::h7f4b4fba903e39d5 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 25: 0x5679b3ae37db - test::__rust_begin_short_backtrace::h9277cb6a2ccfc000 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x5679b3af9285 - test::run_test_in_process::{{closure}}::h9aea5ca90d1f4423 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x5679b3af9285 - as core::ops::function::FnOnce<()>>::call_once::h364f5fe6cc8afa85 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x5679b3af9285 - std::panicking::catch_unwind::do_call::h2b2bec3317fe53ec [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stdout] 29: 0x5679b3af9285 - std::panicking::catch_unwind::hc3763734156da4af [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stdout] 30: 0x5679b3af9285 - std::panic::catch_unwind::h28038391e867eabc [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x5679b3af9285 - test::run_test_in_process::had0273166695a036 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x5679b3af9285 - test::run_test::{{closure}}::h743d09d4bb476605 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x5679b3acfca4 - test::run_test::{{closure}}::he950b8f9118d37e2 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x5679b3acfca4 - std::sys::backtrace::__rust_begin_short_backtrace::hbfaffa6539f6abb7 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 35: 0x5679b3ad358a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hcce3c2c65b9c3b20 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x5679b3ad358a - as core::ops::function::FnOnce<()>>::call_once::hb66b30b6d37985a5 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x5679b3ad358a - std::panicking::catch_unwind::do_call::h992bbe2c32dc1d79 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:590:40 [INFO] [stdout] 38: 0x5679b3ad358a - std::panicking::catch_unwind::h412991d5237de610 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panicking.rs:553:19 [INFO] [stdout] 39: 0x5679b3ad358a - std::panic::catch_unwind::ha82b139b3eb5840a [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x5679b3ad358a - std::thread::Builder::spawn_unchecked_::{{closure}}::ha823b36f5114938e [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x5679b3ad358a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hf120e7b1db22ac07 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 42: 0x5679b480e9df - as core::ops::function::FnOnce>::call_once::h3e049222c99298ac [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 43: 0x5679b480e9df - std::sys::pal::unix::thread::Thread::new::thread_start::h942e336943ad5963 [INFO] [stdout] at /rustc/cdb45c87e2cd43495379f7e867e3cc15dcee9f93/library/std/src/sys/pal/unix/thread.rs:118:17 [INFO] [stdout] 44: 0x70a7b1928aa4 - [INFO] [stdout] 45: 0x70a7b19b5a34 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] encode::parquet::tests::test_encode_fq_for_parquet [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "91ae5745e6d1759b88762bfa3d4ebf3529c4caa3c1f446f2530a9d85b8a20d29", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "91ae5745e6d1759b88762bfa3d4ebf3529c4caa3c1f446f2530a9d85b8a20d29", kill_on_drop: false }` [INFO] [stdout] 91ae5745e6d1759b88762bfa3d4ebf3529c4caa3c1f446f2530a9d85b8a20d29