[INFO] cloning repository https://github.com/vliviu/HME_toolbox_RUST
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/vliviu/HME_toolbox_RUST" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fvliviu%2FHME_toolbox_RUST", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 28bd142e0563289e73de2ee0a5a67bce2a061b17
[INFO] testing vliviu/HME_toolbox_RUST against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fvliviu%2FHME_toolbox_RUST" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/vliviu/HME_toolbox_RUST
[INFO] finished tweaking git repo https://github.com/vliviu/HME_toolbox_RUST
[INFO] tweaked toml for git repo https://github.com/vliviu/HME_toolbox_RUST written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/vliviu/HME_toolbox_RUST on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/vliviu/HME_toolbox_RUST already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3d7a03032111bb9e18f97e23c3f0626c60397da5006ed2d144f356eb04221fb2
[INFO] running `Command { std: "docker" "start" "-a" "3d7a03032111bb9e18f97e23c3f0626c60397da5006ed2d144f356eb04221fb2", kill_on_drop: false }`
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[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling nalgebra v0.27.1
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[INFO] [stderr]    Compiling multimap v0.8.3
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[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling hme_toolbox v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "3d7a03032111bb9e18f97e23c3f0626c60397da5006ed2d144f356eb04221fb2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3d7a03032111bb9e18f97e23c3f0626c60397da5006ed2d144f356eb04221fb2", kill_on_drop: false }`
[INFO] [stdout] 3d7a03032111bb9e18f97e23c3f0626c60397da5006ed2d144f356eb04221fb2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 169de3ac2384a6441caa952ae1d972b4a2bfb3202e5093844a0ee2536c0d35d4
[INFO] running `Command { std: "docker" "start" "-a" "169de3ac2384a6441caa952ae1d972b4a2bfb3202e5093844a0ee2536c0d35d4", kill_on_drop: false }`
[INFO] [stderr]    Compiling hme_toolbox v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> tests/fasta_test.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufReader` and `self`
[INFO] [stdout]  --> tests/fasta_test.rs:3:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io::{self, BufReader}; // Ensure you have plotters dependency
[INFO] [stdout]   |               ^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hme_toolbox::clustering::hme::HMECluster`
[INFO] [stdout]  --> tests/fasta_test.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hme_toolbox::clustering::hme::HMECluster;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hme_toolbox::plotter::plot_clusters as imported_plot_clusters`
[INFO] [stdout]   --> tests/fasta_test.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use hme_toolbox::plotter::plot_clusters as imported_plot_clusters;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.42s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "169de3ac2384a6441caa952ae1d972b4a2bfb3202e5093844a0ee2536c0d35d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "169de3ac2384a6441caa952ae1d972b4a2bfb3202e5093844a0ee2536c0d35d4", kill_on_drop: false }`
[INFO] [stdout] 169de3ac2384a6441caa952ae1d972b4a2bfb3202e5093844a0ee2536c0d35d4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8419081d2f6934537311c8f274b5af671f39d6f31c1cae7fba5f4254e6459b8f
[INFO] running `Command { std: "docker" "start" "-a" "8419081d2f6934537311c8f274b5af671f39d6f31c1cae7fba5f4254e6459b8f", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `std::fs::File`
[INFO] [stderr]  --> tests/fasta_test.rs:2:5
[INFO] [stderr]   |
[INFO] [stderr] 2 | use std::fs::File;
[INFO] [stderr]   |     ^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `BufReader` and `self`
[INFO] [stderr]  --> tests/fasta_test.rs:3:15
[INFO] [stderr]   |
[INFO] [stderr] 3 | use std::io::{self, BufReader}; // Ensure you have plotters dependency
[INFO] [stderr]   |               ^^^^  ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `hme_toolbox::clustering::hme::HMECluster`
[INFO] [stderr]  --> tests/fasta_test.rs:6:5
[INFO] [stderr]   |
[INFO] [stderr] 6 | use hme_toolbox::clustering::hme::HMECluster;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `hme_toolbox::plotter::plot_clusters as imported_plot_clusters`
[INFO] [stderr]   --> tests/fasta_test.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | use hme_toolbox::plotter::plot_clusters as imported_plot_clusters;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `hme_toolbox` (test "fasta_test") generated 4 warnings (run `cargo fix --test "fasta_test"` to apply 4 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hme_toolbox-8e2b7dd89fbb7472)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/hme_toolbox-41d883d065e305cb)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running tests/clustering_tests.rs (/opt/rustwide/target/debug/deps/clustering_tests-ac4c35604f3bd703)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_hierarchical_clustering ... ok
[INFO] [stderr]      Running tests/data_tests.rs (/opt/rustwide/target/debug/deps/data_tests-18ab58747fa05624)
[INFO] [stdout] test test_hme_cluster ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_read_fasta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/evaluation_tests.rs (/opt/rustwide/target/debug/deps/evaluation_tests-80f1b3c908d1d51a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/fasta_test.rs (/opt/rustwide/target/debug/deps/fasta_test-90ba07915e61a181)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_with_large_fasta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.30s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests hme_toolbox
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8419081d2f6934537311c8f274b5af671f39d6f31c1cae7fba5f4254e6459b8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8419081d2f6934537311c8f274b5af671f39d6f31c1cae7fba5f4254e6459b8f", kill_on_drop: false }`
[INFO] [stdout] 8419081d2f6934537311c8f274b5af671f39d6f31c1cae7fba5f4254e6459b8f