[INFO] cloning repository https://github.com/peri4n/nucleotides [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/peri4n/nucleotides" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fperi4n%2Fnucleotides", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fperi4n%2Fnucleotides'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0af835883cd561fa172d813bc7010f6e28fd0606 [INFO] testing peri4n/nucleotides against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fperi4n%2Fnucleotides" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-1-tc1/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/peri4n/nucleotides [INFO] finished tweaking git repo https://github.com/peri4n/nucleotides [INFO] tweaked toml for git repo https://github.com/peri4n/nucleotides written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/peri4n/nucleotides on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/peri4n/nucleotides already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 07ddaf8d5fc4587fb2d2d1d85b996c2560e7205f28144049e306a67a1025efa1 [INFO] running `Command { std: "docker" "start" "-a" "07ddaf8d5fc4587fb2d2d1d85b996c2560e7205f28144049e306a67a1025efa1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "07ddaf8d5fc4587fb2d2d1d85b996c2560e7205f28144049e306a67a1025efa1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "07ddaf8d5fc4587fb2d2d1d85b996c2560e7205f28144049e306a67a1025efa1", kill_on_drop: false }` [INFO] [stdout] 07ddaf8d5fc4587fb2d2d1d85b996c2560e7205f28144049e306a67a1025efa1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6a0d45dc845702728a6774615f36dffad442ea514e74a4212a04f33a33895f5f [INFO] running `Command { std: "docker" "start" "-a" "6a0d45dc845702728a6774615f36dffad442ea514e74a4212a04f33a33895f5f", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling nuc v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `CHAR_TO_TWO_BIT` and `hash_chars_le` [INFO] [stdout] --> src/dna.rs:7:34 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::hash::{hash_chars_be, hash_chars_le, CHAR_TO_TWO_BIT}; [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the feature `bufread_skip_until` has been stable since 1.83.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | #![feature(bufread_skip_until)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.54s [INFO] running `Command { std: "docker" "inspect" "6a0d45dc845702728a6774615f36dffad442ea514e74a4212a04f33a33895f5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a0d45dc845702728a6774615f36dffad442ea514e74a4212a04f33a33895f5f", kill_on_drop: false }` [INFO] [stdout] 6a0d45dc845702728a6774615f36dffad442ea514e74a4212a04f33a33895f5f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 31f76bd6a1883cfabbea4b6043ff737f9f92f2ae1d3c56da629a5c55ff9f7dc1 [INFO] running `Command { std: "docker" "start" "-a" "31f76bd6a1883cfabbea4b6043ff737f9f92f2ae1d3c56da629a5c55ff9f7dc1", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling serde v1.0.210 [INFO] [stderr] Compiling serde_derive v1.0.210 [INFO] [stderr] Compiling half v2.4.1 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling clap_builder v4.5.17 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling oorandom v11.1.4 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling is-terminal v0.4.13 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling clap v4.5.17 [INFO] [stderr] Compiling nuc v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `CHAR_TO_TWO_BIT` and `hash_chars_le` [INFO] [stdout] --> src/dna.rs:7:34 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::hash::{hash_chars_be, hash_chars_le, CHAR_TO_TWO_BIT}; [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the feature `bufread_skip_until` has been stable since 1.83.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | #![feature(bufread_skip_until)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling serde_json v1.0.128 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stdout] warning: unused imports: `CHAR_TO_TWO_BIT` and `hash_chars_le` [INFO] [stdout] --> src/dna.rs:7:34 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::hash::{hash_chars_be, hash_chars_le, CHAR_TO_TWO_BIT}; [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the feature `bufread_skip_until` has been stable since 1.83.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | #![feature(bufread_skip_until)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 19.44s [INFO] running `Command { std: "docker" "inspect" "31f76bd6a1883cfabbea4b6043ff737f9f92f2ae1d3c56da629a5c55ff9f7dc1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "31f76bd6a1883cfabbea4b6043ff737f9f92f2ae1d3c56da629a5c55ff9f7dc1", kill_on_drop: false }` [INFO] [stdout] 31f76bd6a1883cfabbea4b6043ff737f9f92f2ae1d3c56da629a5c55ff9f7dc1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 776ee2d22bb5eee7a772eae8aea77bb4be70ba2d177b48bc8c6cbbed9a10791b [INFO] running `Command { std: "docker" "start" "-a" "776ee2d22bb5eee7a772eae8aea77bb4be70ba2d177b48bc8c6cbbed9a10791b", kill_on_drop: false }` [INFO] [stderr] warning: unused imports: `CHAR_TO_TWO_BIT` and `hash_chars_le` [INFO] [stderr] --> src/dna.rs:7:34 [INFO] [stderr] | [INFO] [stderr] 7 | use crate::hash::{hash_chars_be, hash_chars_le, CHAR_TO_TWO_BIT}; [INFO] [stderr] | ^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: the feature `bufread_skip_until` has been stable since 1.83.0 and no longer requires an attribute to enable [INFO] [stderr] --> src/lib.rs:2:12 [INFO] [stderr] | [INFO] [stderr] 2 | #![feature(bufread_skip_until)] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(stable_features)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `nuc` (lib) generated 2 warnings (run `cargo fix --lib -p nuc` to apply 1 suggestion) [INFO] [stderr] warning: `nuc` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nuc-85a09d9a1557fab9) [INFO] [stdout] [INFO] [stderr] Running tests/dna_test.rs (/opt/rustwide/target/debug/deps/dna_test-12ebbce7544f94c3) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test can_be_sorted ... ok [INFO] [stdout] test can_be_created_from_a_string_with_perfect_alignment ... ok [INFO] [stdout] test kmer_cache_contains_correct_value ... ok [INFO] [stdout] test can_be_created_from_a_string_three_empty_nucleotides ... ok [INFO] [stdout] test can_be_appended ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/hash_test.rs (/opt/rustwide/target/debug/deps/hash_test-91ea80627eacd23e) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_hash_chars_big_endian ... ok [INFO] [stdout] test test_hash_chars_litte_endian ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/mod.rs (/opt/rustwide/target/debug/deps/mod-acf9b367a694636c) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test dna_test::can_be_created_from_a_string_with_perfect_alignment ... ok [INFO] [stdout] test dna_test::can_be_created_from_a_string_three_empty_nucleotides ... ok [INFO] [stdout] test dna_test::can_be_appended ... ok [INFO] [stdout] test dna_test::can_be_sorted ... ok [INFO] [stdout] test dna_test::kmer_cache_contains_correct_value ... ok [INFO] [stdout] test hash_test::test_hash_chars_big_endian ... ok [INFO] [stdout] test hash_test::test_hash_chars_litte_endian ... ok [INFO] [stdout] test io::fasta_test::can_read_an_empty_fasta_file ... ok [INFO] [stdout] test io::fasta_test::can_read_an_example_fasta_file ... ok [INFO] [stdout] test io::fastq_test::can_read_an_example_fasta_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests nuc [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test src/dna.rs - dna::Dna::is_empty (line 87) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::random (line 132) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::len (line 77) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::counts (line 163) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::get (line 196) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::trim (line 242) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::append (line 225) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::rc (line 211) ... ok [INFO] [stdout] test src/dna.rs - dna::Dna::from_ascii (line 104) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.45s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "776ee2d22bb5eee7a772eae8aea77bb4be70ba2d177b48bc8c6cbbed9a10791b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "776ee2d22bb5eee7a772eae8aea77bb4be70ba2d177b48bc8c6cbbed9a10791b", kill_on_drop: false }` [INFO] [stdout] 776ee2d22bb5eee7a772eae8aea77bb4be70ba2d177b48bc8c6cbbed9a10791b