[INFO] cloning repository https://github.com/dalofa/filtlong_rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dalofa/filtlong_rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdalofa%2Ffiltlong_rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdalofa%2Ffiltlong_rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 84cba3a651859e9c1b6a865f896df1e40936c6bf [INFO] testing dalofa/filtlong_rust against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdalofa%2Ffiltlong_rust" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/dalofa/filtlong_rust [INFO] finished tweaking git repo https://github.com/dalofa/filtlong_rust [INFO] tweaked toml for git repo https://github.com/dalofa/filtlong_rust written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/dalofa/filtlong_rust on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/dalofa/filtlong_rust already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 124f9603007d42257f3d48254536f2dd77b4a4eaba0ef45ebc6997cb54fef379 [INFO] running `Command { std: "docker" "start" "-a" "124f9603007d42257f3d48254536f2dd77b4a4eaba0ef45ebc6997cb54fef379", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "124f9603007d42257f3d48254536f2dd77b4a4eaba0ef45ebc6997cb54fef379", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "124f9603007d42257f3d48254536f2dd77b4a4eaba0ef45ebc6997cb54fef379", kill_on_drop: false }` [INFO] [stdout] 124f9603007d42257f3d48254536f2dd77b4a4eaba0ef45ebc6997cb54fef379 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ad11e71927818c59223c2d5f7f027d2bbfbf348202d348cdf544e4d20a395419 [INFO] running `Command { std: "docker" "start" "-a" "ad11e71927818c59223c2d5f7f027d2bbfbf348202d348cdf544e4d20a395419", kill_on_drop: false }` [INFO] [stderr] Compiling filtlong_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: enum `NucleoBase` is never used [INFO] [stdout] --> src/genome.rs:10:6 [INFO] [stdout] | [INFO] [stdout] 10 | enum NucleoBase { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Sequence` is never constructed [INFO] [stdout] --> src/genome.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | pub struct Sequence { bases: Vec } [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/genome.rs:18:12 [INFO] [stdout] | [INFO] [stdout] 17 | impl Sequence { [INFO] [stdout] | ------------- associated function in this implementation [INFO] [stdout] 18 | pub fn new(nucleo_base_sequence: &str) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `try_convert_sequence_vector` is never used [INFO] [stdout] --> src/genome.rs:36:4 [INFO] [stdout] | [INFO] [stdout] 36 | fn try_convert_sequence_vector(sequences: Vec) -> Result,String> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GenomeRead` is never constructed [INFO] [stdout] --> src/genome.rs:52:12 [INFO] [stdout] | [INFO] [stdout] 52 | pub struct GenomeRead { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.44s [INFO] running `Command { std: "docker" "inspect" "ad11e71927818c59223c2d5f7f027d2bbfbf348202d348cdf544e4d20a395419", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ad11e71927818c59223c2d5f7f027d2bbfbf348202d348cdf544e4d20a395419", kill_on_drop: false }` [INFO] [stdout] ad11e71927818c59223c2d5f7f027d2bbfbf348202d348cdf544e4d20a395419 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 21a517851e264b5e600a8d6fa99adc464041aad0ba0767b2bc7a83fc73ff7434 [INFO] running `Command { std: "docker" "start" "-a" "21a517851e264b5e600a8d6fa99adc464041aad0ba0767b2bc7a83fc73ff7434", kill_on_drop: false }` [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling test-case-core v3.3.1 [INFO] [stderr] Compiling test-case-macros v3.3.1 [INFO] [stderr] Compiling test-case v3.3.1 [INFO] [stderr] Compiling filtlong_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `bases` is never read [INFO] [stdout] --> src/genome.rs:16:23 [INFO] [stdout] | [INFO] [stdout] 16 | pub struct Sequence { bases: Vec } [INFO] [stdout] | -------- ^^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this struct [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GenomeRead` is never constructed [INFO] [stdout] --> src/genome.rs:52:12 [INFO] [stdout] | [INFO] [stdout] 52 | pub struct GenomeRead { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 6.22s [INFO] running `Command { std: "docker" "inspect" "21a517851e264b5e600a8d6fa99adc464041aad0ba0767b2bc7a83fc73ff7434", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "21a517851e264b5e600a8d6fa99adc464041aad0ba0767b2bc7a83fc73ff7434", kill_on_drop: false }` [INFO] [stdout] 21a517851e264b5e600a8d6fa99adc464041aad0ba0767b2bc7a83fc73ff7434 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4a70f9e215d6f334f99b216e241097bac07767b2d428b2d634e5062764c80a9a [INFO] running `Command { std: "docker" "start" "-a" "4a70f9e215d6f334f99b216e241097bac07767b2d428b2d634e5062764c80a9a", kill_on_drop: false }` [INFO] [stderr] warning: field `bases` is never read [INFO] [stderr] --> src/genome.rs:16:23 [INFO] [stderr] | [INFO] [stderr] 16 | pub struct Sequence { bases: Vec } [INFO] [stderr] | -------- ^^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this struct [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: struct `GenomeRead` is never constructed [INFO] [stderr] --> src/genome.rs:52:12 [INFO] [stderr] | [INFO] [stderr] 52 | pub struct GenomeRead { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `filtlong_rust` (bin "filtlong_rust" test) generated 2 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/filtlong_rust-137eee6577f52916) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test genome::tests::nucleo_base_from_string ... ok [INFO] [stdout] test genome::tests::vec_nucleo_bases_from_strings ... ok [INFO] [stdout] test reader_fastq::tests::incorrect_fastq_file_fails ... ok [INFO] [stdout] test reader_fastq::tests::reading_fastq_file::_example_read_2_fq_expects ... ok [INFO] [stdout] test reader_fastq::tests::reading_fastq_file::_example_read_fq_expects ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4a70f9e215d6f334f99b216e241097bac07767b2d428b2d634e5062764c80a9a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4a70f9e215d6f334f99b216e241097bac07767b2d428b2d634e5062764c80a9a", kill_on_drop: false }` [INFO] [stdout] 4a70f9e215d6f334f99b216e241097bac07767b2d428b2d634e5062764c80a9a