[INFO] cloning repository https://github.com/SorenHeidelbach/motif_methylation_state [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SorenHeidelbach/motif_methylation_state" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Fmotif_methylation_state", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Fmotif_methylation_state'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 502ac26e1f766fdcfcd2e85ca0b1c888eb034027 [INFO] testing SorenHeidelbach/motif_methylation_state against master#cdb45c87e2cd43495379f7e867e3cc15dcee9f93 for pr-145838-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Fmotif_methylation_state" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/SorenHeidelbach/motif_methylation_state [INFO] finished tweaking git repo https://github.com/SorenHeidelbach/motif_methylation_state [INFO] tweaked toml for git repo https://github.com/SorenHeidelbach/motif_methylation_state written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/SorenHeidelbach/motif_methylation_state on toolchain cdb45c87e2cd43495379f7e867e3cc15dcee9f93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/SorenHeidelbach/motif_methylation_state already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded seq_io v0.3.2 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6dee16dd78c21b84d57ee9e9e502f4198f9bd0926bb95d1d5ce37e341c5091a6 [INFO] running `Command { std: "docker" "start" "-a" "6dee16dd78c21b84d57ee9e9e502f4198f9bd0926bb95d1d5ce37e341c5091a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6dee16dd78c21b84d57ee9e9e502f4198f9bd0926bb95d1d5ce37e341c5091a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6dee16dd78c21b84d57ee9e9e502f4198f9bd0926bb95d1d5ce37e341c5091a6", kill_on_drop: false }` [INFO] [stdout] 6dee16dd78c21b84d57ee9e9e502f4198f9bd0926bb95d1d5ce37e341c5091a6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 14bcc87d19515ca9df950a014ed9a75db7bff713befdbec1d5edcabc3d942e73 [INFO] running `Command { std: "docker" "start" "-a" "14bcc87d19515ca9df950a014ed9a75db7bff713befdbec1d5edcabc3d942e73", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling syn v2.0.94 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling wide v0.7.30 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling rustix v0.38.42 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling indexmap v2.7.0 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling itoa v1.0.14 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling clap_lex v0.7.4 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling clap_builder v4.5.23 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling env_filter v0.1.3 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling tempfile v3.15.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling env_logger v0.11.6 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling clap v4.5.23 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling seq_io v0.3.2 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling memopair v0.1.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:5:11 [INFO] [stdout] | [INFO] [stdout] 5 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `verbose` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:63:5 [INFO] [stdout] | [INFO] [stdout] 63 | verbose, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `normal` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:64:5 [INFO] [stdout] | [INFO] [stdout] 64 | normal, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `silent` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:65:5 [INFO] [stdout] | [INFO] [stdout] 65 | silent, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `refenrece_id` [INFO] [stdout] --> src/bin/memopair/methylated_motif_pair.rs:53:22 [INFO] [stdout] | [INFO] [stdout] 53 | for (refenrece_id, contig) in genome_work_space.contigs.into_iter() { [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_refenrece_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 38s [INFO] running `Command { std: "docker" "inspect" "14bcc87d19515ca9df950a014ed9a75db7bff713befdbec1d5edcabc3d942e73", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "14bcc87d19515ca9df950a014ed9a75db7bff713befdbec1d5edcabc3d942e73", kill_on_drop: false }` [INFO] [stdout] 14bcc87d19515ca9df950a014ed9a75db7bff713befdbec1d5edcabc3d942e73 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bd52f22a4d6ab35a98344672f5f8de9a0d94b505c748aa08d7d9d4f845d66d7d [INFO] running `Command { std: "docker" "start" "-a" "bd52f22a4d6ab35a98344672f5f8de9a0d94b505c748aa08d7d9d4f845d66d7d", kill_on_drop: false }` [INFO] [stderr] Compiling memopair v0.1.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:5:11 [INFO] [stdout] | [INFO] [stdout] 5 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:5:11 [INFO] [stdout] | [INFO] [stdout] 5 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `verbose` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:63:5 [INFO] [stdout] | [INFO] [stdout] 63 | verbose, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `normal` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:64:5 [INFO] [stdout] | [INFO] [stdout] 64 | normal, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `silent` should have an upper camel case name [INFO] [stdout] --> src/bin/memopair/cli.rs:65:5 [INFO] [stdout] | [INFO] [stdout] 65 | silent, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `refenrece_id` [INFO] [stdout] --> src/bin/memopair/methylated_motif_pair.rs:53:22 [INFO] [stdout] | [INFO] [stdout] 53 | for (refenrece_id, contig) in genome_work_space.contigs.into_iter() { [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_refenrece_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.12s [INFO] running `Command { std: "docker" "inspect" "bd52f22a4d6ab35a98344672f5f8de9a0d94b505c748aa08d7d9d4f845d66d7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd52f22a4d6ab35a98344672f5f8de9a0d94b505c748aa08d7d9d4f845d66d7d", kill_on_drop: false }` [INFO] [stdout] bd52f22a4d6ab35a98344672f5f8de9a0d94b505c748aa08d7d9d4f845d66d7d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+cdb45c87e2cd43495379f7e867e3cc15dcee9f93" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 999c024f7c04d4a4f5e5af133400ae0050f86d8aac89bb4d6e83d4c7cab5bb5f [INFO] running `Command { std: "docker" "start" "-a" "999c024f7c04d4a4f5e5af133400ae0050f86d8aac89bb4d6e83d4c7cab5bb5f", kill_on_drop: false }` [INFO] [stderr] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stderr] --> src/lib/pileup.rs:5:11 [INFO] [stderr] | [INFO] [stderr] 5 | use log::{debug, info, warn}; [INFO] [stderr] | ^^^^^ ^^^^ ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `memopair` (lib) generated 1 warning (run `cargo fix --lib -p memopair` to apply 1 suggestion) [INFO] [stderr] warning: `memopair` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] warning: variant `verbose` should have an upper camel case name [INFO] [stderr] --> src/bin/memopair/cli.rs:63:5 [INFO] [stderr] | [INFO] [stderr] 63 | verbose, [INFO] [stderr] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_camel_case_types)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: variant `normal` should have an upper camel case name [INFO] [stderr] --> src/bin/memopair/cli.rs:64:5 [INFO] [stderr] | [INFO] [stderr] 64 | normal, [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stderr] [INFO] [stderr] warning: variant `silent` should have an upper camel case name [INFO] [stderr] --> src/bin/memopair/cli.rs:65:5 [INFO] [stderr] | [INFO] [stderr] 65 | silent, [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `refenrece_id` [INFO] [stderr] --> src/bin/memopair/methylated_motif_pair.rs:53:22 [INFO] [stderr] | [INFO] [stderr] 53 | for (refenrece_id, contig) in genome_work_space.contigs.into_iter() { [INFO] [stderr] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_refenrece_id` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `memopair` (bin "memopair" test) generated 4 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests src/lib/lib.rs (/opt/rustwide/target/debug/deps/utils-a2534bb955b1d829) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test iupac::tests::test_complement ... ok [INFO] [stdout] test modtype::tests::test_from_str ... ok [INFO] [stdout] test modtype::tests::test_to_pileup_code ... ok [INFO] [stdout] test motif::tests::test_new ... ok [INFO] [stdout] test modtype::tests::test_from_str_error ... ok [INFO] [stdout] test motif::tests::test_motif_pair_new ... ok [INFO] [stdout] test motif::tests::test_reverse_complement ... ok [INFO] [stdout] test modtype::tests::test_display ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_chunk ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_record ... ok [INFO] [stdout] test pileup::tests::test_parse_and_validate_record ... ok [INFO] [stdout] test pileup::tests::test_low_coverage_filtering ... ok [INFO] [stdout] test pileup::tests::test_n_chunks ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_chunk_reader ... ok [INFO] [stdout] test pileup::tests::test_with_tempfile ... ok [INFO] [stdout] test iupac::tests::test_to_regex ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/memopair/main.rs (/opt/rustwide/target/debug/deps/memopair-0552c5fa7b9b9b46) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test sequence::tests::test_contig_find_complement_motif_indeces ... ok [INFO] [stdout] test sequence::tests::test_contig_add_records ... ok [INFO] [stdout] test sequence::tests::test_contig_add_record ... ok [INFO] [stdout] test sequence::tests::test_contig_find_motif_indeces ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests utils [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "999c024f7c04d4a4f5e5af133400ae0050f86d8aac89bb4d6e83d4c7cab5bb5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "999c024f7c04d4a4f5e5af133400ae0050f86d8aac89bb4d6e83d4c7cab5bb5f", kill_on_drop: false }` [INFO] [stdout] 999c024f7c04d4a4f5e5af133400ae0050f86d8aac89bb4d6e83d4c7cab5bb5f