[INFO] cloning repository https://github.com/yesint/pteros_rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yesint/pteros_rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f79804c72e29484b5a6ca5db6cff4366a7b210e2 [INFO] testing yesint/pteros_rust against try#16fbf98f22730e073c09e7b03f0eafb87a295545 for pr-145628 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. 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[INFO] started tweaking git repo https://github.com/yesint/pteros_rust [INFO] finished tweaking git repo https://github.com/yesint/pteros_rust [INFO] tweaked toml for git repo https://github.com/yesint/pteros_rust written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/yesint/pteros_rust on toolchain 16fbf98f22730e073c09e7b03f0eafb87a295545 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+16fbf98f22730e073c09e7b03f0eafb87a295545" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+16fbf98f22730e073c09e7b03f0eafb87a295545" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 234 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.71.1 (available: v0.72.1) [INFO] [stderr] Adding criterion v0.5.1 (available: v0.7.0) [INFO] [stderr] Adding nalgebra v0.33.2 (available: v0.34.0) [INFO] [stderr] Adding numpy v0.23.0 (available: v0.26.0) [INFO] [stderr] Adding pyo3 v0.23.5 (available: v0.26.0) [INFO] [stderr] Adding toml v0.8.23 (available: v0.9.5) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+16fbf98f22730e073c09e7b03f0eafb87a295545" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+16fbf98f22730e073c09e7b03f0eafb87a295545" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1c9b6e56d5ddd8a00a6f43d7bd3d82d87a7550df40beb0e45d348c468e2675e8 [INFO] running `Command { std: "docker" "start" "-a" "1c9b6e56d5ddd8a00a6f43d7bd3d82d87a7550df40beb0e45d348c468e2675e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c9b6e56d5ddd8a00a6f43d7bd3d82d87a7550df40beb0e45d348c468e2675e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c9b6e56d5ddd8a00a6f43d7bd3d82d87a7550df40beb0e45d348c468e2675e8", kill_on_drop: false }` [INFO] [stdout] 1c9b6e56d5ddd8a00a6f43d7bd3d82d87a7550df40beb0e45d348c468e2675e8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+16fbf98f22730e073c09e7b03f0eafb87a295545" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ed499b5c79aa405268f6f253ce55ed91c23109078c4ea97c3f3a8d36b5a46cc9 [INFO] running `Command { std: "docker" "start" "-a" "ed499b5c79aa405268f6f253ce55ed91c23109078c4ea97c3f3a8d36b5a46cc9", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling cfg-if v1.0.3 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling bitflags v2.9.3 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling anyhow v1.0.99 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling indexmap v2.11.0 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling pyo3-build-config v0.23.5 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling filetime v0.2.26 [INFO] [stderr] Compiling anstream v0.6.20 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling cc v1.2.34 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling litrs v0.4.2 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling parking_lot v0.12.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling peg-runtime v0.8.5 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling document-features v0.2.11 [INFO] [stderr] Compiling peg-macros v0.8.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling xattr v1.5.1 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling clap_builder v4.5.46 [INFO] [stderr] Compiling tar v0.4.44 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling pyo3-macros-backend v0.23.5 [INFO] [stderr] Compiling pyo3-ffi v0.23.5 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling crossterm v0.29.0 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling molar_gromacs v0.9.0 (/opt/rustwide/workdir/molar_gromacs) [INFO] [stderr] Compiling molar_molfile v0.9.0 (/opt/rustwide/workdir/molar_molfile) [INFO] [stderr] Compiling molar_xdrfile v0.9.0 (/opt/rustwide/workdir/molar_xdrfile) [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling molar_powersasa v0.9.3 (/opt/rustwide/workdir/molar_powersasa) [INFO] [stderr] Compiling molar v0.9.3 (/opt/rustwide/workdir/molar) [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] warning: molar@0.9.3: "Gromacs support disabled" [INFO] [stderr] Compiling comfy-table v7.2.0 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling pyo3 v0.23.5 [INFO] [stderr] Compiling toml_write v0.1.2 [INFO] [stderr] Compiling jiff v0.2.15 [INFO] [stderr] Compiling sync-unsafe-cell v0.1.1 [INFO] [stderr] Compiling winnow v0.7.13 [INFO] [stderr] Compiling sorted-vec v0.8.8 [INFO] [stderr] Compiling unindent v0.2.4 [INFO] [stderr] Compiling arc-swap v1.7.1 [INFO] [stderr] Compiling peg v0.8.5 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling clap_derive v4.5.45 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] warning: molar_powersasa@0.9.3: unpacking bundled Eigen headers... [INFO] [stderr] warning: molar_powersasa@0.9.3: Eigen headers in "/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out/eigen/eigen-3.4.0" [INFO] [stderr] warning: molar_powersasa@0.9.3: c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] warning: molar_powersasa@0.9.3: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `molar_powersasa v0.9.3 (/opt/rustwide/workdir/molar_powersasa)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/molar_powersasa-6b41fd2a4257a78a/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo::warning=unpacking bundled Eigen headers... [INFO] [stderr] cargo::warning=Eigen headers in "/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out/eigen/eigen-3.4.0" [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out) [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:warning=c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: command did not execute successfully (status code exit status: 1): LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out/eigen/eigen-3.4.0" "-std=c++17" "-D_GLIBCXX_NO_ASSERTIONS" "-o" "/opt/rustwide/target/debug/build/molar_powersasa-db413a1d3916e09d/out/c21451b121f45848-wrapper.o" "-c" "powersasa/wrapper.cpp" [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "ed499b5c79aa405268f6f253ce55ed91c23109078c4ea97c3f3a8d36b5a46cc9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed499b5c79aa405268f6f253ce55ed91c23109078c4ea97c3f3a8d36b5a46cc9", kill_on_drop: false }` [INFO] [stdout] ed499b5c79aa405268f6f253ce55ed91c23109078c4ea97c3f3a8d36b5a46cc9