[INFO] fetching crate microBioRust 0.1.2... [INFO] testing microBioRust-0.1.2 against master#160e7623e8cbbf1feab2b6e2a24733a98c7bde9c for pr-145628 [INFO] extracting crate microBioRust 0.1.2 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate microBioRust 0.1.2 [INFO] finished tweaking crates.io crate microBioRust 0.1.2 [INFO] tweaked toml for crates.io crate microBioRust 0.1.2 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate microBioRust 0.1.2 on toolchain 160e7623e8cbbf1feab2b6e2a24733a98c7bde9c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate microBioRust 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded protein-translate v0.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 000c127e6b31ecd94edd5da994af943673e8eec259d40d1843fd353faed5fc4b [INFO] running `Command { std: "docker" "start" "-a" "000c127e6b31ecd94edd5da994af943673e8eec259d40d1843fd353faed5fc4b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "000c127e6b31ecd94edd5da994af943673e8eec259d40d1843fd353faed5fc4b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "000c127e6b31ecd94edd5da994af943673e8eec259d40d1843fd353faed5fc4b", kill_on_drop: false }` [INFO] [stdout] 000c127e6b31ecd94edd5da994af943673e8eec259d40d1843fd353faed5fc4b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 60a44450a971a717867e9906d5aab7134fd6e6aa8fdb8f33b65e9f33926b201c [INFO] running `Command { std: "docker" "start" "-a" "60a44450a971a717867e9906d5aab7134fd6e6aa8fdb8f33b65e9f33926b201c", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling protein-translate v0.2.0 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling clap_builder v4.5.40 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling clap v4.5.40 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling microBioRust v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] ... [INFO] [stdout] 898 | / create_builder!( [INFO] [stdout] 899 | | SourceAttributeBuilder, [INFO] [stdout] 900 | | source_attributes, [INFO] [stdout] 901 | | SourceAttributes, [INFO] [stdout] ... | [INFO] [stdout] 910 | | DbXref { value:String} [INFO] [stdout] 911 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] ... [INFO] [stdout] 945 | / create_builder!( [INFO] [stdout] 946 | | FeatureAttributeBuilder, [INFO] [stdout] 947 | | attributes, [INFO] [stdout] 948 | | FeatureAttributes, [INFO] [stdout] ... | [INFO] [stdout] 955 | | Strand { value: i8 } [INFO] [stdout] 956 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] ... [INFO] [stdout] 988 | / create_builder!( [INFO] [stdout] 989 | | SequenceAttributeBuilder, [INFO] [stdout] 990 | | seq_attributes, [INFO] [stdout] 991 | | SequenceAttributes, [INFO] [stdout] ... | [INFO] [stdout] 998 | | Strand { value: i8 } [INFO] [stdout] 999 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] ::: src/embl.rs:834:1 [INFO] [stdout] | [INFO] [stdout] 834 | / create_builder!( [INFO] [stdout] 835 | | SourceAttributeBuilder, [INFO] [stdout] 836 | | source_attributes, [INFO] [stdout] 837 | | SourceAttributes, [INFO] [stdout] ... | [INFO] [stdout] 846 | | DbXref { value:String} [INFO] [stdout] 847 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] ::: src/embl.rs:881:1 [INFO] [stdout] | [INFO] [stdout] 881 | / create_builder!( [INFO] [stdout] 882 | | FeatureAttributeBuilder, [INFO] [stdout] 883 | | attributes, [INFO] [stdout] 884 | | FeatureAttributes, [INFO] [stdout] ... | [INFO] [stdout] 891 | | Strand { value: i8 } [INFO] [stdout] 892 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/gbk.rs:365:25 [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] ::: src/embl.rs:924:1 [INFO] [stdout] | [INFO] [stdout] 924 | / create_builder!( [INFO] [stdout] 925 | | SequenceAttributeBuilder, [INFO] [stdout] 926 | | seq_attributes, [INFO] [stdout] 927 | | SequenceAttributes, [INFO] [stdout] ... | [INFO] [stdout] 934 | | Strand { value: i8 } [INFO] [stdout] 935 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: this warning originates in the macro `create_builder` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 365 | pub fn iter_sorted(&self) -> std::collections::btree_map::Iter<'_, String, HashSet<$enum_name>> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 35.84s [INFO] running `Command { std: "docker" "inspect" "60a44450a971a717867e9906d5aab7134fd6e6aa8fdb8f33b65e9f33926b201c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60a44450a971a717867e9906d5aab7134fd6e6aa8fdb8f33b65e9f33926b201c", kill_on_drop: false }` [INFO] [stdout] 60a44450a971a717867e9906d5aab7134fd6e6aa8fdb8f33b65e9f33926b201c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e81509b19733fcfa3688f94b519c51df8778cf034ba4664f58c5ca6d8d84faf5 [INFO] running `Command { std: "docker" "start" "-a" "e81509b19733fcfa3688f94b519c51df8778cf034ba4664f58c5ca6d8d84faf5", kill_on_drop: false }` [INFO] [stderr] error: failed to download `aho-corasick v1.1.3` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] unable to get packages from source [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack package `aho-corasick v1.1.3` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to create directory `/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/aho-corasick-1.1.3` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] Read-only file system (os error 30) [INFO] running `Command { std: "docker" "inspect" "e81509b19733fcfa3688f94b519c51df8778cf034ba4664f58c5ca6d8d84faf5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e81509b19733fcfa3688f94b519c51df8778cf034ba4664f58c5ca6d8d84faf5", kill_on_drop: false }` [INFO] [stdout] e81509b19733fcfa3688f94b519c51df8778cf034ba4664f58c5ca6d8d84faf5