[INFO] fetching crate atglib 0.2.3... [INFO] testing atglib-0.2.3 against master#160e7623e8cbbf1feab2b6e2a24733a98c7bde9c for pr-145628-retry-1 [INFO] extracting crate atglib 0.2.3 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate atglib 0.2.3 [INFO] finished tweaking crates.io crate atglib 0.2.3 [INFO] tweaked toml for crates.io crate atglib 0.2.3 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate atglib 0.2.3 on toolchain 160e7623e8cbbf1feab2b6e2a24733a98c7bde9c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 77 packages to latest compatible versions [INFO] [stderr] Adding criterion v0.4.0 (available: v0.7.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded plotters-svg v0.3.7 [INFO] [stderr] Downloaded oorandom v11.1.5 [INFO] [stderr] Downloaded plotters v0.3.7 [INFO] [stderr] Downloaded regex v1.11.2 [INFO] [stderr] Downloaded plotters-backend v0.3.7 [INFO] [stderr] Downloaded criterion v0.4.0 [INFO] [stderr] Downloaded rayon-core v1.13.0 [INFO] [stderr] Downloaded regex-automata v0.4.10 [INFO] [stderr] Downloaded regex-syntax v0.8.6 [INFO] [stderr] Downloaded rayon v1.11.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 410233c1fe306c17bb468ebc066b9dc653fe5ed59ce45e0d184bee8d85be8c9f [INFO] running `Command { std: "docker" "start" "-a" "410233c1fe306c17bb468ebc066b9dc653fe5ed59ce45e0d184bee8d85be8c9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "410233c1fe306c17bb468ebc066b9dc653fe5ed59ce45e0d184bee8d85be8c9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "410233c1fe306c17bb468ebc066b9dc653fe5ed59ce45e0d184bee8d85be8c9f", kill_on_drop: false }` [INFO] [stdout] 410233c1fe306c17bb468ebc066b9dc653fe5ed59ce45e0d184bee8d85be8c9f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7edd2c32d450350c124b6250a8fae357807dad74bc20b1ae32e51a6e05cada27 [INFO] running `Command { std: "docker" "start" "-a" "7edd2c32d450350c124b6250a8fae357807dad74bc20b1ae32e51a6e05cada27", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling atglib v0.2.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.90s [INFO] running `Command { std: "docker" "inspect" "7edd2c32d450350c124b6250a8fae357807dad74bc20b1ae32e51a6e05cada27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7edd2c32d450350c124b6250a8fae357807dad74bc20b1ae32e51a6e05cada27", kill_on_drop: false }` [INFO] [stdout] 7edd2c32d450350c124b6250a8fae357807dad74bc20b1ae32e51a6e05cada27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] be3dd4c648fcb0359bb0c91cc0c586b305dfee273072b4b507c21ac1f5ccd6ea [INFO] running `Command { std: "docker" "start" "-a" "be3dd4c648fcb0359bb0c91cc0c586b305dfee273072b4b507c21ac1f5ccd6ea", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling serde_json v1.0.143 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling half v2.6.0 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling textwrap v0.16.2 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling oorandom v11.1.5 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling atglib v0.2.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling criterion v0.4.0 [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 26.94s [INFO] running `Command { std: "docker" "inspect" "be3dd4c648fcb0359bb0c91cc0c586b305dfee273072b4b507c21ac1f5ccd6ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be3dd4c648fcb0359bb0c91cc0c586b305dfee273072b4b507c21ac1f5ccd6ea", kill_on_drop: false }` [INFO] [stdout] be3dd4c648fcb0359bb0c91cc0c586b305dfee273072b4b507c21ac1f5ccd6ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+160e7623e8cbbf1feab2b6e2a24733a98c7bde9c" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a3ff3c568f7103e79bb1afe2a11afed86c57b8cb9ed06408f8d2890c0395ea0f [INFO] running `Command { std: "docker" "start" "-a" "a3ff3c568f7103e79bb1afe2a11afed86c57b8cb9ed06408f8d2890c0395ea0f", kill_on_drop: false }` [INFO] [stderr] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stderr] --> src/gtf/record.rs:742:17 [INFO] [stderr] | [INFO] [stderr] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stderr] | [INFO] [stderr] = note: no expected values for `feature` [INFO] [stderr] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/models/transcript.rs:285:29 [INFO] [stderr] | [INFO] [stderr] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/models/transcript.rs:297:28 [INFO] [stderr] | [INFO] [stderr] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/models/transcript.rs:316:28 [INFO] [stderr] | [INFO] [stderr] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/models/transcript.rs:342:29 [INFO] [stderr] | [INFO] [stderr] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/models/transcript.rs:364:29 [INFO] [stderr] | [INFO] [stderr] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `atglib` (lib) generated 6 warnings (run `cargo fix --lib -p atglib` to apply 5 suggestions) [INFO] [stderr] warning: `atglib` (lib test) generated 6 warnings (6 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/atglib-ae94f747c4103d1d) [INFO] [stdout] [INFO] [stdout] running 132 tests [INFO] [stdout] test fasta::reader::tests::test_fasta_reading ... ok [INFO] [stdout] test fasta::writer::tests::test_creating_writer ... ok [INFO] [stdout] test fasta::writer::tests::test_sequence_building ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test fasta::reader::tests::test_fai_reading ... ok [INFO] [stdout] test fasta::reader::tests::test_fai_errors ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test gtf::reader::tests::test_3_utr ... ok [INFO] [stdout] test gtf::reader::tests::test_5_utr ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_contains_invalid_data ... ok [INFO] [stdout] test gtf::reader::test_ighm::test_read ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test gtf::reader::test_nm_201550::test_read ... ok [INFO] [stdout] test gtf::record::tests::test_single_attribute_parsing ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test models::genetic_code::tests::test_reverse_lookup ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test models::genetic_code::tests::test_mito_stop_codon ... ok [INFO] [stdout] test gtf::reader::tests::test_utr ... ok [INFO] [stdout] test gtf::reader::tests::test_without_gene_or_transcript_errors ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_returns_none ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test gtf::record::tests::test_attributes_parsing ... ok [INFO] [stdout] test gtf::reader::test_nm_001385228::test_read ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test models::genetic_code::tests::test_start_codon ... ok [INFO] [stdout] test models::genetic_code::tests::test_stop_codon ... ok [INFO] [stdout] test models::genetic_code::tests::test_transcript ... ok [INFO] [stdout] test models::sequence::tests::test_chunks ... ok [INFO] [stdout] test models::test_codon::test_codon_builder ... ok [INFO] [stdout] test models::test_start_codon::case_1 ... ok [INFO] [stdout] test models::test_start_codon::case_3 ... ok [INFO] [stdout] test models::test_start_codon::case_4 ... ok [INFO] [stdout] test models::test_start_codon::case_5 ... ok [INFO] [stdout] test models::test_start_codon::case_6 ... ok [INFO] [stdout] test models::sequence::tests::test_contains ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_1 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_2 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_3 ... ok [INFO] [stdout] test models::sequence::tests::test_create_sequence ... ok [INFO] [stdout] test models::test_start_codon::case_2 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_4 ... ok [INFO] [stdout] test models::test_stop_codon::case_2 ... ok [INFO] [stdout] test models::test_stop_codon::case_4 ... ok [INFO] [stdout] test models::test_stop_codon::case_5 ... ok [INFO] [stdout] test models::test_stop_codon::case_6 ... ok [INFO] [stdout] test models::test_stop_codon::case_1 ... ok [INFO] [stdout] test models::test_stop_codon::case_3 ... ok [INFO] [stdout] test models::tests::test_exon_downstream_frame ... ok [INFO] [stdout] test models::tests::test_frame_addition ... ok [INFO] [stdout] test models::transcript::tests::test_exon_coordinates ... ok [INFO] [stdout] test models::transcript::tests::test_utr3_coordinates ... ok [INFO] [stdout] test models::transcript::tests::test_cds_coordinates ... ok [INFO] [stdout] test qc::test::test_check_inframe_stop ... ok [INFO] [stdout] test qc::test::test_correct_reverse_single_start_codon ... ok [INFO] [stdout] test qc::test::test_correct_forward_split_start_codon ... ok [INFO] [stdout] test qc::test::test_correct_forward_single_start_codon ... ok [INFO] [stdout] test qc::test::test_correct_forward_split_stop_codon ... ok [INFO] [stdout] test models::transcript::tests::test_utr5_coordinates ... ok [INFO] [stdout] test qc::test::test_correct_forward_single_stop_codon ... ok [INFO] [stdout] test models::transcript::tests::test_utr_coordinates ... ok [INFO] [stdout] test qc::test::test_correct_reverse_split_start_codon ... ok [INFO] [stdout] test models::tests::test_special_transcripts ... ok [INFO] [stdout] test qc::test::test_non_coding_cds_length ... ok [INFO] [stdout] test qc::test::test_correct_cds_length ... ok [INFO] [stdout] test qc::test::test_extra_start_codon ... ok [INFO] [stdout] test qc::test::test_incorrect_cds_length ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_start ... ok [INFO] [stdout] test models::tests::test_transcript ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_stop ... ok [INFO] [stdout] test qc::writer::tests::test_adding_genetic_codes ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_is_skipped ... ok [INFO] [stdout] test qc::test::test_correct_reverse_single_stop_codon ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test qc::test::test_starts_with_start_codon ... ok [INFO] [stdout] test refgene::reader::tests::test_wrong_exon_frame ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_frame ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test refgene::reader::tests::test_parse_exons_no_cds ... ok [INFO] [stdout] test qc::writer::tests::test_chromosome_with_alternative_stop_codons ... ok [INFO] [stdout] test qc::test::test_qc_check ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test qc::test::test_incorrect_forward_single_start_codon ... ok [INFO] [stdout] test refgene::tests::test_transcript_building ... ok [INFO] [stdout] test qc::test::test_incorrect_forward_split_start_codon ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::test_multiple_transcripts ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::write_multiple_transcripts ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::test_single_transcript ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_a_fully_in_b ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::write_transcripts ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_b_fully_in_a ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_left_overlap ... ok [INFO] [stdout] test tests::transcripts::tests::test_mito_transcript ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_no_overlap ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_right_overlap ... ok [INFO] [stdout] test refgene::tests::test_parse_exons_with_cds ... ok [INFO] [stdout] test refgene::tests::test_parsing_and_composing ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_match ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_overlaps ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_right ... ok [INFO] [stdout] test utils::genomic_relations::test_merge::test_merge ... ok [INFO] [stdout] test utils::genomic_relations::test_overlap::test_cds_overlap ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_1 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_upstream ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_2 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_3 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_downstream ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_5 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_4 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_inside ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_6 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_left ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_7 ... ok [INFO] [stdout] test models::sequence::tests::test_contains_fails - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 132 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Doc-tests atglib [INFO] [stdout] [INFO] [stdout] running 88 tests [INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader::from_file (line 156) ... ok [INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader (line 136) ... ok [INFO] [stdout] test src/genepredext/writer.rs - genepredext::writer::Writer (line 12) ... ok [INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 31) ... ok [INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer::fasta_reader (line 127) ... ok [INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader::from_reader (line 220) ... ok [INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader::new (line 176) ... ok [INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader::read_sequence (line 271) ... ok [INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer::header_template (line 173) ... ok [INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader (line 16) ... ok [INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid::single_letter (line 58) ... ok [INFO] [stdout] test src/bed/writer.rs - bed::writer::Writer (line 14) ... ok [INFO] [stdout] test src/genepred/writer.rs - genepred::writer::Writer (line 12) ... ok [INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader::transcripts (line 125) ... ok [INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader (line 22) ... ok [INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader::transcripts (line 137) ... ok [INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader::from_file (line 44) ... ok [INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 54) ... ok [INFO] [stdout] test src/lib.rs - (line 43) ... ok [INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid (line 12) ... ok [INFO] [stdout] test src/lib.rs - (line 22) ... ok [INFO] [stdout] test src/gtf/record.rs - gtf::record::GtfRecordBuilder (line 414) ... ok [INFO] [stdout] test src/models/codon.rs - models::codon::Codon::from_transcript (line 41) ... ok [INFO] [stdout] test src/gtf/writer.rs - gtf::writer::Writer (line 17) ... ok [INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_gtf (line 67) ... ok [INFO] [stdout] test src/models/frame.rs - models::frame::Frame (line 17) ... ok [INFO] [stdout] test src/models/exon.rs - models::exon::Exon::new (line 38) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode (line 22) ... ok [INFO] [stdout] test src/models/exon.rs - models::exon::Exon (line 10) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::guess (line 167) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_start_codon (line 305) ... ok [INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_refgene (line 129) ... ok [INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader::from_file (line 51) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::stop_codons (line 268) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::translate (line 221) ... ok [INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_refgene (line 86) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_stop_codon (line 283) ... ok [INFO] [stdout] test src/models/exon.rs - models::exon::Exon::is_coding (line 124) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::reverse_lookup (line 237) ... ok [INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_gtf (line 110) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_bytes (line 66) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::as_ncbi_int (line 106) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::vertebrate_mitochondrial (line 115) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::append (line 480) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::complement (line 501) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_str (line 83) ... ok [INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::new (line 78) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::chunks (line 593) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::len (line 412) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_raw_bytes (line 350) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::complement (line 45) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::clear (line 466) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::new (line 299) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::contains (line 646) ... ok [INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_gene (line 97) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push (line 447) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push_char (line 431) ... ok [INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder (line 443) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_coordinates (line 376) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::write_into_string (line 568) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::position (line 611) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::equals (line 661) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::to_bytes (line 552) ... ok [INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder<'a>::new (line 479) ... ok [INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts (line 13) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse_complement (line 535) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::with_capacity (line 322) ... ok [INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_name (line 66) ... ok [INFO] [stdout] test src/models/utils.rs - models::utils::Strand (line 58) ... ok [INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::push (line 128) ... ok [INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse (line 519) ... ok [INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader (line 20) ... ok [INFO] [stdout] test src/spliceai/writer.rs - spliceai::writer::Writer (line 17) ... ok [INFO] [stdout] test src/qc/mod.rs - qc::QcCheck::new (line 193) ... ok [INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader::from_file (line 48) ... ok [INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::union (line 66) ... ok [INFO] [stdout] test src/qc/mod.rs - qc (line 22) ... ok [INFO] [stdout] test src/refgene/writer.rs - refgene::writer::Writer (line 15) ... ok [INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader::transcripts (line 125) ... ok [INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer::add_genetic_code (line 108) ... ok [INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::intersect (line 42) ... ok [INFO] [stdout] test src/qc/mod.rs - qc::QcCheck (line 132) ... ok [INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::relation (line 184) ... ok [INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::exon_cds_overlap (line 213) ... ok [INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer::fasta_reader (line 79) ... ok [INFO] [stdout] test src/qc/mod.rs - qc (line 43) ... ok [INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::subtract (line 133) ... ok [INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer (line 16) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 88 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 6.16s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "a3ff3c568f7103e79bb1afe2a11afed86c57b8cb9ed06408f8d2890c0395ea0f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3ff3c568f7103e79bb1afe2a11afed86c57b8cb9ed06408f8d2890c0395ea0f", kill_on_drop: false }` [INFO] [stdout] a3ff3c568f7103e79bb1afe2a11afed86c57b8cb9ed06408f8d2890c0395ea0f