[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cc v1.0.59 [INFO] [stderr] Downloaded cmake v0.1.44 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] eb3ba124a821e1b666354b04a8bca212e16205aa9dc5b8bb20e2d5b4ad91e633 [INFO] running `Command { std: "docker" "start" "-a" "eb3ba124a821e1b666354b04a8bca212e16205aa9dc5b8bb20e2d5b4ad91e633", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "eb3ba124a821e1b666354b04a8bca212e16205aa9dc5b8bb20e2d5b4ad91e633", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb3ba124a821e1b666354b04a8bca212e16205aa9dc5b8bb20e2d5b4ad91e633", kill_on_drop: false }` [INFO] [stdout] eb3ba124a821e1b666354b04a8bca212e16205aa9dc5b8bb20e2d5b4ad91e633 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35afb5397f4a8487f4617854bf2ffd41cac3cafa99624ab6e93da3d4cf51f5ee [INFO] running `Command { std: "docker" "start" "-a" "35afb5397f4a8487f4617854bf2ffd41cac3cafa99624ab6e93da3d4cf51f5ee", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: openmm-sys@7.4.1: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-eb37e8fa1debed52/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/openmm-sys-5edaefa1fd143afb/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-5edaefa1fd143afb/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python3 (found version "3.12.3") [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:15 (find_package): [INFO] [stderr] Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules [INFO] [stderr] are removed. Run "cmake --help-policy CMP0148" for policy details. Use [INFO] [stderr] the cmake_policy command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:21 (PROJECT): [INFO] [stderr] cmake_minimum_required() should be called prior to this top-level project() [INFO] [stderr] call. Please see the cmake-commands(7) manual for usage documentation of [INFO] [stderr] both commands. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_MINIMUM_REQUIRED): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:30 (INCLUDE): [INFO] [stderr] Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run [INFO] [stderr] "cmake --help-policy CMP0145" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.28/Modules/Dart.cmake:47 (message): [INFO] [stderr] Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run [INFO] [stderr] "cmake --help-policy CMP0145" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] CMakeLists.txt:30 (INCLUDE) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.28/Modules/FindPackageHandleStandardArgs.cmake:230 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.28/Modules/FindPackageHandleStandardArgs.cmake:600 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.28/Modules/FindDoxygen.cmake:681 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' (79) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.44/src/lib.rs:885:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x627a957812b2 - ::fmt::he2170ac7a9b7d8e2 [INFO] [stderr] 1: 0x627a957a382f - core::fmt::write::h08b69b6f6da9dedb [INFO] [stderr] 2: 0x627a95771623 - std::io::Write::write_fmt::h6c1a272d72aa806a [INFO] [stderr] 3: 0x627a957810b2 - std::sys::backtrace::BacktraceLock::print::ha3901afbdca4af34 [INFO] [stderr] 4: 0x627a9576f04c - std::panicking::default_hook::{{closure}}::h21b46c3ea4063e1b [INFO] [stderr] 5: 0x627a9576ee8f - std::panicking::default_hook::hc9b0213082b48a5b [INFO] [stderr] 6: 0x627a9576e645 - std::panicking::panic_with_hook::h2fc74b51da84ab93 [INFO] [stderr] 7: 0x627a95780c3a - std::panicking::panic_handler::{{closure}}::hce1829c84eba5126 [INFO] [stderr] 8: 0x627a95780b99 - std::sys::backtrace::__rust_end_short_backtrace::h5d12bc139fa5e72b [INFO] [stderr] 9: 0x627a9576e3bd - __rustc[4e1d0de11a6e25cc]::rust_begin_unwind [INFO] [stderr] 10: 0x627a957a62c0 - core::panicking::panic_fmt::h633d971b6a6af30d [INFO] [stderr] 11: 0x627a9571b06b - cmake::fail::h45b2bdaeaf5cde03 [INFO] [stderr] 12: 0x627a95719c4a - cmake::run::h41670b2e7be27051 [INFO] [stderr] 13: 0x627a9571e4c8 - cmake::Config::build::h6aef197d214b5821 [INFO] [stderr] 14: 0x627a957150af - build_script_build::main::ha03b17d04dfefc1a [INFO] [stderr] 15: 0x627a95718763 - core::ops::function::FnOnce::call_once::h4453ede50b245a12 [INFO] [stderr] 16: 0x627a95718b56 - std::sys::backtrace::__rust_begin_short_backtrace::h3d13dd1fdf7dab98 [INFO] [stderr] 17: 0x627a957180b9 - std::rt::lang_start::{{closure}}::haab7049ff960cf7a [INFO] [stderr] 18: 0x627a95781b50 - std::rt::lang_start_internal::h2ee79d1be614d639 [INFO] [stderr] 19: 0x627a957180f1 - std::rt::lang_start::hd2fbea283691d86c [INFO] [stderr] 20: 0x627a957190c5 - main [INFO] [stderr] 21: 0x72eb959be1ca - [INFO] [stderr] 22: 0x72eb959be28b - __libc_start_main [INFO] [stderr] 23: 0x627a95713ac5 - _start [INFO] [stderr] 24: 0x0 - [INFO] running `Command { std: "docker" "inspect" "35afb5397f4a8487f4617854bf2ffd41cac3cafa99624ab6e93da3d4cf51f5ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35afb5397f4a8487f4617854bf2ffd41cac3cafa99624ab6e93da3d4cf51f5ee", kill_on_drop: false }` [INFO] [stdout] 35afb5397f4a8487f4617854bf2ffd41cac3cafa99624ab6e93da3d4cf51f5ee