[INFO] fetching crate openbabel-sys 0.5.4+openbabel-3.1.1... [INFO] checking openbabel-sys-0.5.4+openbabel-3.1.1 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] extracting crate openbabel-sys 0.5.4+openbabel-3.1.1 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate openbabel-sys 0.5.4+openbabel-3.1.1 [INFO] finished tweaking crates.io crate openbabel-sys 0.5.4+openbabel-3.1.1 [INFO] tweaked toml for crates.io crate openbabel-sys 0.5.4+openbabel-3.1.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate openbabel-sys 0.5.4+openbabel-3.1.1 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 55 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3799c75e560585105a21553a1542942d98b339ae7d5b6b2138b182de9cad43da [INFO] running `Command { std: "docker" "start" "-a" "3799c75e560585105a21553a1542942d98b339ae7d5b6b2138b182de9cad43da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3799c75e560585105a21553a1542942d98b339ae7d5b6b2138b182de9cad43da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3799c75e560585105a21553a1542942d98b339ae7d5b6b2138b182de9cad43da", kill_on_drop: false }` [INFO] [stdout] 3799c75e560585105a21553a1542942d98b339ae7d5b6b2138b182de9cad43da [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 09938bf10eeb7e59d7af08fd8781da1ca6eec6c890cd0e29388d0bbb59a46ed7 [INFO] running `Command { std: "docker" "start" "-a" "09938bf10eeb7e59d7af08fd8781da1ca6eec6c890cd0e29388d0bbb59a46ed7", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling scratch v1.0.9 [INFO] [stderr] Compiling cxxbridge-flags v1.0.174 [INFO] [stderr] Compiling cc v1.2.35 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Compiling fs_extra v1.3.0 [INFO] [stderr] Checking bitflags v2.9.4 [INFO] [stderr] Checking linux-raw-sys v0.9.4 [INFO] [stderr] Checking foldhash v0.2.0 [INFO] [stderr] Checking fastrand v2.3.0 [INFO] [stderr] Compiling codespan-reporting v0.12.0 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Checking getrandom v0.3.3 [INFO] [stderr] Compiling link-cplusplus v1.0.11 [INFO] [stderr] Compiling cxx v1.0.174 [INFO] [stderr] Checking tempfile v3.21.0 [INFO] [stderr] Compiling cxx-build v1.0.174 [INFO] [stderr] Compiling cxxbridge-macro v1.0.174 [INFO] [stderr] Compiling openbabel-sys v0.5.4+openbabel-3.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2857:35: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2857 | snprintf(tcount, 10, "%d", i); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2857:19: note: 'snprintf' output between 2 and 11 bytes into a destination of size 10 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2857 | snprintf(tcount, 10, "%d", i); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2865:35: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2865 | snprintf(tcount, 10, "%d", hcount); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2865:19: note: 'snprintf' output between 2 and 11 bytes into a destination of size 10 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2865 | snprintf(tcount, 10, "%d", hcount); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2881:32: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2881 | snprintf(tchar, 10, "%d", abs(charge)); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/smilesformat.cpp:2881:17: note: 'snprintf' output between 2 and 11 bytes into a destination of size 10 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 2881 | snprintf(tchar, 10, "%d", abs(charge)); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: At global scope: [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: cc1plus: note: unrecognized command-line option '-Wno-unused-private-field' may have been intended to silence earlier diagnostics [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()': [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/mdlformat.cpp:1709:27: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/mdlformat.cpp:1709:13: note: 'snprintf' output between 11 and 56 bytes into a destination of size 11 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 1710 | ((ts->tm_year>=100)? ts->tm_year-100 : ts->tm_year), [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 1711 | ts->tm_hour, ts->tm_min); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: At global scope: [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: cc1plus: note: unrecognized command-line option '-Wno-unused-private-field' may have been intended to silence earlier diagnostics [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/pdbformat.cpp:684:58: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 684 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/pdbformat.cpp:684:21: note: 'snprintf' output between 5 and 11 bytes into a destination of size 10 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 684 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/pdbformat.cpp:702:70: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 702 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/formats/pdbformat.cpp:702:29: note: 'snprintf' output between 5 and 11 bytes into a destination of size 10 [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 702 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: At global scope: [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: cc1plus: note: unrecognized command-line option '-Wno-unused-private-field' may have been intended to silence earlier diagnostics [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: openbabel/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment] [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: 423 | // / \ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: | ^ [INFO] [stderr] warning: openbabel-sys@0.5.4+openbabel-3.1.1: cc1plus: note: unrecognized command-line option '-Wno-unused-private-field' may have been intended to silence earlier diagnostics [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 32s [INFO] running `Command { std: "docker" "inspect" "09938bf10eeb7e59d7af08fd8781da1ca6eec6c890cd0e29388d0bbb59a46ed7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "09938bf10eeb7e59d7af08fd8781da1ca6eec6c890cd0e29388d0bbb59a46ed7", kill_on_drop: false }` [INFO] [stdout] 09938bf10eeb7e59d7af08fd8781da1ca6eec6c890cd0e29388d0bbb59a46ed7