[INFO] fetching crate oarfish 0.9.0... [INFO] checking oarfish-0.9.0 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] extracting crate oarfish 0.9.0 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate oarfish 0.9.0 [INFO] finished tweaking crates.io crate oarfish 0.9.0 [INFO] tweaked toml for crates.io crate oarfish 0.9.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate oarfish 0.9.0 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate oarfish 0.9.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded seqcol_rs v0.4.1 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded typed-builder-macro v0.21.0 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded hash_hasher v2.0.4 [INFO] [stderr] Downloaded noodles-bgzf v0.41.0 [INFO] [stderr] Downloaded noodles-csi v0.49.0 [INFO] [stderr] Downloaded minimap2 v0.1.27+minimap2.2.30 [INFO] [stderr] Downloaded noodles-sam v0.77.0 [INFO] [stderr] Downloaded niffler v3.0.0 [INFO] [stderr] Downloaded tabled v0.20.0 [INFO] [stderr] Downloaded noodles-bam v0.81.0 [INFO] [stderr] Downloaded typed-builder v0.21.0 [INFO] [stderr] Downloaded sendable-swapvec v0.4.3 [INFO] [stderr] Downloaded papergrid v0.17.0 [INFO] [stderr] Downloaded minimap2-sys v0.1.23+minimap2.2.30 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded arrow2 v0.18.0 [INFO] [stderr] Downloaded kders v0.1.1 [INFO] [stderr] Downloaded path-tools v0.1.0 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d395aaddf5aa002d2c55823dde39fd554ae021937a4118388a20b654f6bfc1ab [INFO] running `Command { std: "docker" "start" "-a" "d395aaddf5aa002d2c55823dde39fd554ae021937a4118388a20b654f6bfc1ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d395aaddf5aa002d2c55823dde39fd554ae021937a4118388a20b654f6bfc1ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d395aaddf5aa002d2c55823dde39fd554ae021937a4118388a20b654f6bfc1ab", kill_on_drop: false }` [INFO] [stdout] d395aaddf5aa002d2c55823dde39fd554ae021937a4118388a20b654f6bfc1ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ea155cb6139a3d1243a4c5845b8a2cdd32c3deef4e0a26d6c7907d7bc0e10425 [INFO] running `Command { std: "docker" "start" "-a" "ea155cb6139a3d1243a4c5845b8a2cdd32c3deef4e0a26d6c7907d7bc0e10425", kill_on_drop: false }` [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking lexical-util v1.0.6 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling zstd-sys v2.0.15+zstd.1.5.7 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling bytemuck_derive v1.9.3 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Compiling zstd-safe v6.0.6 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling sha2-asm v0.6.4 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Compiling async-stream-impl v0.3.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking lexical-write-integer v1.0.5 [INFO] [stderr] Checking lexical-parse-integer v1.0.5 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking noodles-bgzf v0.41.0 [INFO] [stderr] Compiling lz4-sys v1.11.1+lz4-1.10.0 [INFO] [stderr] Compiling minimap2-sys v0.1.23+minimap2.2.30 [INFO] [stderr] Checking lexical-parse-float v1.0.5 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking array-init-cursor v0.2.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Checking lexical-write-float v1.0.5 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking rustix v1.0.7 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking async-stream v0.3.6 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] [stderr] Checking tracing v0.1.41 [INFO] [stderr] Compiling arrow2 v0.18.0 [INFO] [stderr] Checking lexical-core v1.0.5 [INFO] [stderr] Checking ahash v0.8.12 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking snap v1.1.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking bytemuck v1.23.1 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking twox-hash v1.6.3 [INFO] [stderr] Checking papergrid v0.17.0 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking lz4_flex v0.10.0 [INFO] [stderr] Checking bstr v1.12.0 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking tempfile v3.20.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling tabled_derive v0.11.0 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Checking noodles-core v0.17.0 [INFO] [stderr] Checking noodles-csi v0.49.0 [INFO] [stderr] Checking tracing-subscriber v0.3.19 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking bgzip v0.3.1 [INFO] [stderr] Checking thiserror v2.0.12 [INFO] [stderr] Checking noodles-sam v0.77.0 [INFO] [stderr] Checking testing_table v0.3.0 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling typed-builder-macro v0.21.0 [INFO] [stderr] Checking ndarray-stats v0.6.0 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking ethnum v1.5.2 [INFO] [stderr] Checking foreign_vec v0.1.0 [INFO] [stderr] Checking serde v1.0.219 [INFO] [stderr] Checking hash_hasher v2.0.4 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking clap v4.5.40 [INFO] [stderr] Checking sprs v0.11.3 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking tabled v0.20.0 [INFO] [stderr] Checking parse-size v1.1.0 [INFO] [stderr] Checking path-tools v0.1.0 [INFO] [stderr] Checking noodles-bam v0.81.0 [INFO] [stderr] Checking atomic_float v1.1.0 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking typed-builder v0.21.0 [INFO] [stderr] Checking futures-executor v0.3.31 [INFO] [stderr] Checking futures v0.3.31 [INFO] [stderr] Checking parquet-format-safe v0.2.4 [INFO] [stderr] Checking kders v0.1.1 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking arrow-format v0.8.1 [INFO] [stderr] Checking serde_json v1.0.140 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking sendable-swapvec v0.4.3 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking zstd v0.12.4 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking niffler v3.0.0 [INFO] [stderr] Checking parquet2 v0.17.2 [INFO] [stderr] Checking minimap2 v0.1.27+minimap2.2.30 [INFO] [stderr] Checking seqcol_rs v0.4.1 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking lz4 v1.28.1 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking oarfish v0.9.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/util/oarfish_types.rs:135:17 [INFO] [stdout] | [INFO] [stdout] 135 | pub fn iter(&self) -> ReadChunkIter { [INFO] [stdout] | ^^^^^ ------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 135 | pub fn iter(&self) -> ReadChunkIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/util/oarfish_types.rs:705:17 [INFO] [stdout] | [INFO] [stdout] 705 | pub fn iter(&self) -> InMemoryAlignmentStoreIter { [INFO] [stdout] | ^^^^^ -------------------------- [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is hidden here [INFO] [stdout] | | the same lifetime is hidden here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 705 | pub fn iter(&self) -> InMemoryAlignmentStoreIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/util/oarfish_types.rs:135:17 [INFO] [stdout] | [INFO] [stdout] 135 | pub fn iter(&self) -> ReadChunkIter { [INFO] [stdout] | ^^^^^ ------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 135 | pub fn iter(&self) -> ReadChunkIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/util/oarfish_types.rs:705:17 [INFO] [stdout] | [INFO] [stdout] 705 | pub fn iter(&self) -> InMemoryAlignmentStoreIter { [INFO] [stdout] | ^^^^^ -------------------------- [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is hidden here [INFO] [stdout] | | the same lifetime is hidden here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 705 | pub fn iter(&self) -> InMemoryAlignmentStoreIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.67s [INFO] running `Command { std: "docker" "inspect" "ea155cb6139a3d1243a4c5845b8a2cdd32c3deef4e0a26d6c7907d7bc0e10425", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ea155cb6139a3d1243a4c5845b8a2cdd32c3deef4e0a26d6c7907d7bc0e10425", kill_on_drop: false }` [INFO] [stdout] ea155cb6139a3d1243a4c5845b8a2cdd32c3deef4e0a26d6c7907d7bc0e10425