[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] checking ncbi-vdb-sys-0.1.6 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-4-tc1/source [INFO] removed /workspace/builds/worker-4-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e370b40fc159828b63c1bad109d4fff1760ddacdc314632a9f6a78a244cf32dc [INFO] running `Command { std: "docker" "start" "-a" "e370b40fc159828b63c1bad109d4fff1760ddacdc314632a9f6a78a244cf32dc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e370b40fc159828b63c1bad109d4fff1760ddacdc314632a9f6a78a244cf32dc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e370b40fc159828b63c1bad109d4fff1760ddacdc314632a9f6a78a244cf32dc", kill_on_drop: false }` [INFO] [stdout] e370b40fc159828b63c1bad109d4fff1760ddacdc314632a9f6a78a244cf32dc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f484c174c1783df40ed62fa2187268d75523fc1481660015b516f791a9af7edd [INFO] running `Command { std: "docker" "start" "-a" "f484c174c1783df40ed62fa2187268d75523fc1481660015b516f791a9af7edd", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Checking clap_builder v4.5.37 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-eeeaaaa7b257f0af/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' (88) panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5677ba9bbb82 - std::backtrace_rs::backtrace::libunwind::trace::h982c226fb4228175 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5677ba9bbb82 - std::backtrace_rs::backtrace::trace_unsynchronized::h8cc9ffd61ea62d23 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5677ba9bbb82 - std::sys::backtrace::_print_fmt::h4cd5293c5cadcdba [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5677ba9bbb82 - ::fmt::he2170ac7a9b7d8e2 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5677ba9daf7f - core::fmt::rt::Argument::fmt::he3e46e602c5238bb [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5677ba9daf7f - core::fmt::write::h08b69b6f6da9dedb [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5677ba9ad523 - std::io::default_write_fmt::hbaf91e190600da50 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5677ba9ad523 - std::io::Write::write_fmt::h6c1a272d72aa806a [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5677ba9bb9c2 - std::sys::backtrace::BacktraceLock::print::ha3901afbdca4af34 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5677ba9ab3dc - std::panicking::default_hook::{{closure}}::h21b46c3ea4063e1b [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5677ba9ab21f - std::panicking::default_hook::hc9b0213082b48a5b [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5677ba9aaa85 - std::panicking::panic_with_hook::h2fc74b51da84ab93 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5677ba9bb516 - std::panicking::panic_handler::{{closure}}::hce1829c84eba5126 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x5677ba9bb4a9 - std::sys::backtrace::__rust_end_short_backtrace::h5d12bc139fa5e72b [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5677ba9aa7fd - __rustc[4e1d0de11a6e25cc]::rust_begin_unwind [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5677ba9dce60 - core::panicking::panic_fmt::h633d971b6a6af30d [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5677ba978e2b - build_script_build::main::h2d6a767589742a14 [INFO] [stderr] 17: 0x5677ba977d93 - core::ops::function::FnOnce::call_once::h0037cf991e246afd [INFO] [stderr] 18: 0x5677ba9787c6 - std::sys::backtrace::__rust_begin_short_backtrace::h6e9d4d0fe1b5725a [INFO] [stderr] 19: 0x5677ba978469 - std::rt::lang_start::{{closure}}::h5232305567a9a12a [INFO] [stderr] 20: 0x5677ba9bc3d0 - core::ops::function::impls:: for &F>::call_once::h6fdf5846d395b249 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x5677ba9bc3d0 - std::panicking::catch_unwind::do_call::h9c9fbecc0eb64106 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x5677ba9bc3d0 - std::panicking::catch_unwind::hb949e3b05dcea7f8 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x5677ba9bc3d0 - std::panic::catch_unwind::h597b2e757d3f0617 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x5677ba9bc3d0 - std::rt::lang_start_internal::{{closure}}::h734b73e4ff4afa90 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x5677ba9bc3d0 - std::panicking::catch_unwind::do_call::he1ae9b58298bf5f6 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x5677ba9bc3d0 - std::panicking::catch_unwind::h60545927488899ea [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x5677ba9bc3d0 - std::panic::catch_unwind::hd58020504305ae1d [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5677ba9bc3d0 - std::rt::lang_start_internal::h2ee79d1be614d639 [INFO] [stderr] at /rustc/8c32e313cccf7df531e2d49ffb8227bb92304aee/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x5677ba9784a1 - std::rt::lang_start::h9703e72e0158c8d4 [INFO] [stderr] 30: 0x5677ba97b165 - main [INFO] [stderr] 31: 0x7e23ae3471ca - [INFO] [stderr] 32: 0x7e23ae34728b - __libc_start_main [INFO] [stderr] 33: 0x5677ba977005 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "f484c174c1783df40ed62fa2187268d75523fc1481660015b516f791a9af7edd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f484c174c1783df40ed62fa2187268d75523fc1481660015b516f791a9af7edd", kill_on_drop: false }` [INFO] [stdout] f484c174c1783df40ed62fa2187268d75523fc1481660015b516f791a9af7edd