[INFO] fetching crate kractor 2.0.0... [INFO] checking kractor-2.0.0 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] extracting crate kractor 2.0.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate kractor 2.0.0 [INFO] finished tweaking crates.io crate kractor 2.0.0 [INFO] tweaked toml for crates.io crate kractor 2.0.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate kractor 2.0.0 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate kractor 2.0.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-fastq v0.18.0 [INFO] [stderr] Downloaded niffler v3.0.0 [INFO] [stderr] Downloaded noodles-bgzf v0.39.0 [INFO] [stderr] Downloaded noodles-fasta v0.52.0 [INFO] [stderr] Downloaded noodles v0.97.0 [INFO] [stderr] Downloaded noodles-core v0.17.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 71f27cf35d9b79a97c2b4216a087d22a2bf70d832d84731d36f7a40ec7c7ada2 [INFO] running `Command { std: "docker" "start" "-a" "71f27cf35d9b79a97c2b4216a087d22a2bf70d832d84731d36f7a40ec7c7ada2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "71f27cf35d9b79a97c2b4216a087d22a2bf70d832d84731d36f7a40ec7c7ada2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71f27cf35d9b79a97c2b4216a087d22a2bf70d832d84731d36f7a40ec7c7ada2", kill_on_drop: false }` [INFO] [stdout] 71f27cf35d9b79a97c2b4216a087d22a2bf70d832d84731d36f7a40ec7c7ada2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 04627dd74843ddec0c764baa0895e9e423fc3cd1109fd84531cdd79822ce2aa8 [INFO] running `Command { std: "docker" "start" "-a" "04627dd74843ddec0c764baa0895e9e423fc3cd1109fd84531cdd79822ce2aa8", kill_on_drop: false }` [INFO] [stderr] Checking zlib-rs v0.5.0 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Checking thread_local v1.1.8 [INFO] [stderr] Checking bstr v1.12.0 [INFO] [stderr] Checking tracing v0.1.41 [INFO] [stderr] Compiling backtrace v0.3.71 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Compiling getrandom v0.3.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking clap_builder v4.5.36 [INFO] [stderr] Checking tracing-subscriber v0.3.19 [INFO] [stderr] Checking noodles-core v0.17.0 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking noodles-fastq v0.18.0 [INFO] [stderr] Checking eyre v0.6.12 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Checking is-terminal v0.4.16 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Checking tracing-error v0.2.1 [INFO] [stderr] Checking chrono v0.4.40 [INFO] [stderr] Checking tempfile v3.19.1 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking color-spantrace v0.2.1 [INFO] [stderr] Checking libz-rs-sys v0.5.0 [INFO] [stderr] Checking color-eyre v0.6.3 [INFO] [stderr] Checking flate2 v1.1.1 [INFO] [stderr] Checking noodles-bgzf v0.39.0 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Checking noodles-fasta v0.52.0 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Checking noodles v0.97.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling clap_derive v4.5.32 [INFO] [stderr] Checking thiserror v2.0.12 [INFO] [stderr] Checking niffler v3.0.0 [INFO] [stderr] Checking clap v4.5.36 [INFO] [stderr] Checking serde v1.0.219 [INFO] [stderr] Checking serde_json v1.0.140 [INFO] [stderr] Checking kractor v2.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `reads_parsed` [INFO] [stdout] --> src/extract.rs:213:14 [INFO] [stdout] | [INFO] [stdout] 213 | let (reads_parsed, reads_output) = process_single_end( [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reads_parsed` [INFO] [stdout] --> src/extract.rs:242:14 [INFO] [stdout] | [INFO] [stdout] 242 | let (reads_parsed, reads_output) = process_single_end( [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reads_parsed1` [INFO] [stdout] --> src/extract.rs:296:15 [INFO] [stdout] | [INFO] [stdout] 296 | let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end( [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reads_parsed2` [INFO] [stdout] --> src/extract.rs:296:47 [INFO] [stdout] | [INFO] [stdout] 296 | let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end( [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reads_parsed1` [INFO] [stdout] --> src/extract.rs:334:15 [INFO] [stdout] | [INFO] [stdout] 334 | let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end( [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reads_parsed2` [INFO] [stdout] --> src/extract.rs:334:47 [INFO] [stdout] | [INFO] [stdout] 334 | let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end( [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon_counts` [INFO] [stdout] --> src/parsers/kraken.rs:371:29 [INFO] [stdout] | [INFO] [stdout] 371 | let (reads_to_save, taxon_counts) = [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon_counts` [INFO] [stdout] --> src/parsers/kraken.rs:392:29 [INFO] [stdout] | [INFO] [stdout] 392 | let (reads_to_save, taxon_counts) = [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon_counts` [INFO] [stdout] --> src/parsers/kraken.rs:453:29 [INFO] [stdout] | [INFO] [stdout] 453 | let (reads_to_save, taxon_counts) = process_kraken_output(&file_path, false, &[]).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon_counts` [INFO] [stdout] --> src/parsers/kraken.rs:455:29 [INFO] [stdout] | [INFO] [stdout] 455 | let (reads_to_save, taxon_counts) = process_kraken_output(&file_path, true, &[]).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 28.42s [INFO] running `Command { std: "docker" "inspect" "04627dd74843ddec0c764baa0895e9e423fc3cd1109fd84531cdd79822ce2aa8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04627dd74843ddec0c764baa0895e9e423fc3cd1109fd84531cdd79822ce2aa8", kill_on_drop: false }` [INFO] [stdout] 04627dd74843ddec0c764baa0895e9e423fc3cd1109fd84531cdd79822ce2aa8