[INFO] fetching crate gffkit 0.1.2...
[INFO] checking gffkit-0.1.2 against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1
[INFO] extracting crate gffkit 0.1.2 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate gffkit 0.1.2
[INFO] finished tweaking crates.io crate gffkit 0.1.2
[INFO] tweaked toml for crates.io crate gffkit 0.1.2 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gffkit 0.1.2 on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate gffkit 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.74.0
[INFO] [stderr]   Downloaded noodles-fasta v0.38.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded human-sort v0.2.2
[INFO] [stderr]   Downloaded noodles-gff v0.33.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded noodles-csi v0.35.0
[INFO] [stderr]   Downloaded wide v0.7.20
[INFO] [stderr]   Downloaded noodles-bgzf v0.30.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded noodles-gtf v0.28.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 317ec03213505effccf1a187c24f1cd19cef638c81ff88f6cf1ec475ed40dcc4
[INFO] running `Command { std: "docker" "start" "-a" "317ec03213505effccf1a187c24f1cd19cef638c81ff88f6cf1ec475ed40dcc4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "317ec03213505effccf1a187c24f1cd19cef638c81ff88f6cf1ec475ed40dcc4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "317ec03213505effccf1a187c24f1cd19cef638c81ff88f6cf1ec475ed40dcc4", kill_on_drop: false }`
[INFO] [stdout] 317ec03213505effccf1a187c24f1cd19cef638c81ff88f6cf1ec475ed40dcc4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 56d2d11ace4595dbe6436b4701bf62bc4ca6d10206bec29277000c25595dc09a
[INFO] running `Command { std: "docker" "start" "-a" "56d2d11ace4595dbe6436b4701bf62bc4ca6d10206bec29277000c25595dc09a", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.83
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling cc v1.0.98
[INFO] [stderr]    Compiling serde v1.0.202
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking miniz_oxide v0.7.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking bytemuck v1.16.0
[INFO] [stderr]     Checking bytes v1.6.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking rustix v0.38.34
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking wide v0.7.20
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking either v1.12.0
[INFO] [stderr]     Checking flate2 v1.0.30
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]     Checking human-sort v0.2.2
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]     Checking crossbeam-channel v0.5.13
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]    Compiling syn v2.0.65
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking noodles-bgzf v0.30.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking is-terminal v0.4.12
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking terminal_size v0.3.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking noodles-csi v0.35.0
[INFO] [stderr]     Checking noodles-fasta v0.38.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking chrono v0.4.38
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking noodles-gff v0.33.0
[INFO] [stderr]     Checking noodles-gtf v0.28.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking noodles v0.74.0
[INFO] [stderr]     Checking regex v1.10.4
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.202
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.61
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking gffkit v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 43.10s
[INFO] running `Command { std: "docker" "inspect" "56d2d11ace4595dbe6436b4701bf62bc4ca6d10206bec29277000c25595dc09a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "56d2d11ace4595dbe6436b4701bf62bc4ca6d10206bec29277000c25595dc09a", kill_on_drop: false }`
[INFO] [stdout] 56d2d11ace4595dbe6436b4701bf62bc4ca6d10206bec29277000c25595dc09a