[INFO] cloning repository https://github.com/guertinlab/fqdedup [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/fqdedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Ffqdedup", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Ffqdedup'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ea20cbff76a2b3eb2d838900c46fc0bafd8fe1ba [INFO] checking guertinlab/fqdedup against master#8c32e313cccf7df531e2d49ffb8227bb92304aee for pr-145608-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Ffqdedup" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/guertinlab/fqdedup [INFO] finished tweaking git repo https://github.com/guertinlab/fqdedup [INFO] tweaked toml for git repo https://github.com/guertinlab/fqdedup written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/guertinlab/fqdedup on toolchain 8c32e313cccf7df531e2d49ffb8227bb92304aee [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/guertinlab/fqdedup already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded quote v0.3.15 [INFO] [stderr] Downloaded synom v0.11.3 [INFO] [stderr] Downloaded syn v0.11.11 [INFO] [stderr] Downloaded lazy_static v1.0.0 [INFO] [stderr] Downloaded aho-corasick v0.6.4 [INFO] [stderr] Downloaded serde v1.0.25 [INFO] [stderr] Downloaded serde_derive_internals v0.18.1 [INFO] [stderr] Downloaded libc v0.2.34 [INFO] [stderr] Downloaded regex-syntax v0.4.1 [INFO] [stderr] Downloaded regex v0.2.3 [INFO] [stderr] Downloaded unicode-xid v0.0.4 [INFO] [stderr] Downloaded memchr v2.0.1 [INFO] [stderr] Downloaded thread_local v0.3.5 [INFO] [stderr] Downloaded utf8-ranges v1.0.0 [INFO] [stderr] Downloaded strsim v0.6.0 [INFO] [stderr] Downloaded bitflags v1.0.1 [INFO] [stderr] Downloaded void v1.0.2 [INFO] [stderr] Downloaded unreachable v1.0.0 [INFO] [stderr] Downloaded patricia_tree v0.1.1 [INFO] [stderr] Downloaded serde_derive v1.0.25 [INFO] [stderr] Downloaded docopt v0.8.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ddf985e76ed2375d41c4c5326ed9586d260be59774de5ecb50960f26d5b9e9ff [INFO] running `Command { std: "docker" "start" "-a" "ddf985e76ed2375d41c4c5326ed9586d260be59774de5ecb50960f26d5b9e9ff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ddf985e76ed2375d41c4c5326ed9586d260be59774de5ecb50960f26d5b9e9ff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ddf985e76ed2375d41c4c5326ed9586d260be59774de5ecb50960f26d5b9e9ff", kill_on_drop: false }` [INFO] [stdout] ddf985e76ed2375d41c4c5326ed9586d260be59774de5ecb50960f26d5b9e9ff [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+8c32e313cccf7df531e2d49ffb8227bb92304aee" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fc63cc1d07e8e7e7f431117f130ddf920f7f5ac37b5398d51fa45c49439936e0 [INFO] running `Command { std: "docker" "start" "-a" "fc63cc1d07e8e7e7f431117f130ddf920f7f5ac37b5398d51fa45c49439936e0", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Checking libc v0.2.34 [INFO] [stderr] Compiling unicode-xid v0.0.4 [INFO] [stderr] Compiling quote v0.3.15 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Checking lazy_static v1.0.0 [INFO] [stderr] Checking regex-syntax v0.4.1 [INFO] [stderr] Checking utf8-ranges v1.0.0 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking serde v1.0.25 [INFO] [stderr] Checking strsim v0.6.0 [INFO] [stderr] Checking bitflags v1.0.1 [INFO] [stderr] Compiling synom v0.11.3 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Checking thread_local v0.3.5 [INFO] [stderr] Compiling syn v0.11.11 [INFO] [stderr] Checking memchr v2.0.1 [INFO] [stderr] Checking patricia_tree v0.1.1 [INFO] [stderr] Checking aho-corasick v0.6.4 [INFO] [stderr] Checking regex v0.2.3 [INFO] [stderr] Compiling serde_derive_internals v0.18.1 [INFO] [stderr] Compiling serde_derive v1.0.25 [INFO] [stderr] Checking docopt v0.8.1 [INFO] [stderr] Checking fqdedup v1.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:39:45 [INFO] [stdout] | [INFO] [stdout] 39 | panic!(format!("Error: {}", err.description())); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:39:45 [INFO] [stdout] | [INFO] [stdout] 39 | panic!(format!("Error: {}", err.description())); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:136:21 [INFO] [stdout] | [INFO] [stdout] 136 | let mut output = File::create(output_filename(&args.arg_filename, args.flag_output)).unwrap(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:148:17 [INFO] [stdout] | [INFO] [stdout] 148 | let mut output = File::create(output_filename(&args.arg_filename, args.flag_output)).unwrap(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/main.rs:27:17 [INFO] [stdout] | [INFO] [stdout] 27 | #[derive(Debug, Deserialize)] [INFO] [stdout] | -^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `Args` is not local [INFO] [stdout] | `Deserialize` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_Args` [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:39:20 [INFO] [stdout] | [INFO] [stdout] 39 | panic!(format!("Error: {}", err.description())); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 39 - panic!(format!("Error: {}", err.description())); [INFO] [stdout] 39 + panic!("Error: {}", err.description()); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:53:21 [INFO] [stdout] | [INFO] [stdout] 53 | _ => panic!(format!("Unknown base: {}", base as char)) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 53 - _ => panic!(format!("Unknown base: {}", base as char)) [INFO] [stdout] 53 + _ => panic!("Unknown base: {}", base as char) [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:136:21 [INFO] [stdout] | [INFO] [stdout] 136 | let mut output = File::create(output_filename(&args.arg_filename, args.flag_output)).unwrap(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:148:17 [INFO] [stdout] | [INFO] [stdout] 148 | let mut output = File::create(output_filename(&args.arg_filename, args.flag_output)).unwrap(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/main.rs:27:17 [INFO] [stdout] | [INFO] [stdout] 27 | #[derive(Debug, Deserialize)] [INFO] [stdout] | -^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `Args` is not local [INFO] [stdout] | `Deserialize` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_Args` [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:39:20 [INFO] [stdout] | [INFO] [stdout] 39 | panic!(format!("Error: {}", err.description())); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 39 - panic!(format!("Error: {}", err.description())); [INFO] [stdout] 39 + panic!("Error: {}", err.description()); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:53:21 [INFO] [stdout] | [INFO] [stdout] 53 | _ => panic!(format!("Unknown base: {}", base as char)) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 53 - _ => panic!(format!("Unknown base: {}", base as char)) [INFO] [stdout] 53 + _ => panic!("Unknown base: {}", base as char) [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.72s [INFO] running `Command { std: "docker" "inspect" "fc63cc1d07e8e7e7f431117f130ddf920f7f5ac37b5398d51fa45c49439936e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fc63cc1d07e8e7e7f431117f130ddf920f7f5ac37b5398d51fa45c49439936e0", kill_on_drop: false }` [INFO] [stdout] fc63cc1d07e8e7e7f431117f130ddf920f7f5ac37b5398d51fa45c49439936e0