[INFO] cloning repository https://github.com/dib-lab/oxli [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dib-lab/oxli" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdib-lab%2Foxli", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdib-lab%2Foxli'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7ed4df772d21703226bccd6ff5d2db679271ddc4 [INFO] checking dib-lab/oxli against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdib-lab%2Foxli" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/dib-lab/oxli [INFO] finished tweaking git repo https://github.com/dib-lab/oxli [INFO] tweaked toml for git repo https://github.com/dib-lab/oxli written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/dib-lab/oxli on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/dib-lab/oxli already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded murmurhash3 v0.0.5 [INFO] [stderr] Downloaded typed-builder-macro v0.20.1 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded bzip2 v0.5.1 [INFO] [stderr] Downloaded niffler v3.0.0 [INFO] [stderr] Downloaded sourmash v0.21.0 [INFO] [stderr] Downloaded codepage-437 v0.1.0 [INFO] [stderr] Downloaded roaring v0.11.0 [INFO] [stderr] Downloaded vec-collections v0.4.3 [INFO] [stderr] Downloaded piz v0.5.1 [INFO] [stderr] Downloaded roots v0.0.8 [INFO] [stderr] Downloaded typed-builder v0.20.1 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7eb561a18c43bd657e362ab918a47e7b383aa374e488fa767eb32c66f7fbeaad [INFO] running `Command { std: "docker" "start" "-a" "7eb561a18c43bd657e362ab918a47e7b383aa374e488fa767eb32c66f7fbeaad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7eb561a18c43bd657e362ab918a47e7b383aa374e488fa767eb32c66f7fbeaad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7eb561a18c43bd657e362ab918a47e7b383aa374e488fa767eb32c66f7fbeaad", kill_on_drop: false }` [INFO] [stdout] 7eb561a18c43bd657e362ab918a47e7b383aa374e488fa767eb32c66f7fbeaad [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5992d1ff0635b18168cce45ca9b7e14c812a8e60e019b34bb5565c5e0ecf5bfb [INFO] running `Command { std: "docker" "start" "-a" "5992d1ff0635b18168cce45ca9b7e14c812a8e60e019b34bb5565c5e0ecf5bfb", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling target-lexicon v0.13.2 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Checking bytemuck v1.22.0 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking log v0.4.27 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking miniz_oxide v0.8.0 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling proc-macro2-diagnostics v0.10.1 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling pyo3-build-config v0.25.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking regex-syntax v0.8.4 [INFO] [stderr] Compiling camino v1.1.10 [INFO] [stderr] Compiling thiserror v2.0.3 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Checking flate2 v1.0.33 [INFO] [stderr] Checking wide v0.7.28 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling cc v1.1.15 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling serde_json v1.0.142 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Compiling az v1.2.1 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking iana-time-zone v0.1.60 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking inplace-vec-builder v0.1.1 [INFO] [stderr] Checking anstyle-parse v0.2.5 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking colorchoice v1.0.2 [INFO] [stderr] Compiling sourmash v0.21.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking anstyle v1.0.8 [INFO] [stderr] Checking sorted-iter v0.1.11 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking aliasable v0.1.3 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking binary-merge v0.1.2 [INFO] [stderr] Checking anstyle-query v1.1.1 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking streaming-stats v0.2.3 [INFO] [stderr] Checking anstream v0.6.15 [INFO] [stderr] Checking counter v0.6.0 [INFO] [stderr] Checking memmap2 v0.9.5 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking primal-check v0.3.4 [INFO] [stderr] Checking roaring v0.11.0 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking nohash-hasher v0.2.0 [INFO] [stderr] Checking regex-automata v0.4.7 [INFO] [stderr] Checking md5 v0.7.0 [INFO] [stderr] Checking roots v0.0.8 [INFO] [stderr] Checking jiff v0.2.9 [INFO] [stderr] Checking murmurhash3 v0.0.5 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling pyo3-macros-backend v0.25.1 [INFO] [stderr] Compiling pyo3-ffi v0.25.1 [INFO] [stderr] Compiling pyo3 v0.25.1 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling bzip2-sys v0.1.12+1.0.8 [INFO] [stderr] Compiling codepage-437 v0.1.0 [INFO] [stderr] Checking bzip2 v0.5.1 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Checking regex v1.10.6 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking env_filter v0.1.2 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling thiserror-impl v2.0.3 [INFO] [stderr] Compiling ouroboros_macro v0.18.5 [INFO] [stderr] Compiling typed-builder-macro v0.20.1 [INFO] [stderr] Compiling enum_dispatch v0.3.13 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking typed-builder v0.20.1 [INFO] [stderr] Checking bgzip v0.3.1 [INFO] [stderr] Checking histogram v0.11.3 [INFO] [stderr] Checking ouroboros v0.18.5 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking zstd v0.13.2 [INFO] [stderr] Checking niffler v3.0.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking twox-hash v1.6.3 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Compiling pyo3-macros v0.25.1 [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--version-script=/tmp/rustce8eoIz/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustce8eoIz/symbols.o" "<8 object files omitted>" "/tmp/rustce8eoIz/rmeta.o" "<1 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libpyo3_macros_backend-67ef0754c94ebf51,libpyo3_build_config-e3ad00975f605550,libonce_cell-934a7f6bf1a96730,libtarget_lexicon-07cef37a429b0f6e,libheck-8e1f98ffb0a497ae,libsyn-d0861592b1e2a13f,libquote-956151233555e791,libproc_macro2-138f4409be67359d,libunicode_ident-f2de522ba645d884}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*,librustc_literal_escaper-*,librustc_std_workspace_std-*,libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustce8eoIz/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libpyo3_macros-ffea04377764b131.so" "-Wl,--gc-sections" "-shared" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace. [INFO] [stdout] collect2: fatal error: ld terminated with signal 7 [Bus error], core dumped [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `pyo3-macros` (lib) due to 1 previous error [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "5992d1ff0635b18168cce45ca9b7e14c812a8e60e019b34bb5565c5e0ecf5bfb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5992d1ff0635b18168cce45ca9b7e14c812a8e60e019b34bb5565c5e0ecf5bfb", kill_on_drop: false }` [INFO] [stdout] 5992d1ff0635b18168cce45ca9b7e14c812a8e60e019b34bb5565c5e0ecf5bfb