[INFO] fetching crate rdkit 0.4.12... [INFO] checking rdkit-0.4.12 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] extracting crate rdkit 0.4.12 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate rdkit 0.4.12 [INFO] removed 0 missing examples [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate rdkit 0.4.12 [INFO] tweaked toml for crates.io crate rdkit 0.4.12 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rdkit 0.4.12 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rdkit 0.4.12 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1bce3315bd6b81fc5976712b83a41fa6ee625d14d97e178d289f2e289fa86a1e [INFO] running `Command { std: "docker" "start" "-a" "1bce3315bd6b81fc5976712b83a41fa6ee625d14d97e178d289f2e289fa86a1e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1bce3315bd6b81fc5976712b83a41fa6ee625d14d97e178d289f2e289fa86a1e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1bce3315bd6b81fc5976712b83a41fa6ee625d14d97e178d289f2e289fa86a1e", kill_on_drop: false }` [INFO] [stdout] 1bce3315bd6b81fc5976712b83a41fa6ee625d14d97e178d289f2e289fa86a1e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0ef95d7baa1e9fe29e1bb085bf13b9169847b01e365514b9a9bf0644f3b29560 [INFO] running `Command { std: "docker" "start" "-a" "0ef95d7baa1e9fe29e1bb085bf13b9169847b01e365514b9a9bf0644f3b29560", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling cc v1.0.101 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling scratch v1.0.7 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling cxxbridge-flags v1.0.124 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling unicode-width v0.1.13 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Compiling thiserror v1.0.61 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Checking miniz_oxide v0.7.4 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking wyz v0.5.1 [INFO] [stderr] Compiling codespan-reporting v0.11.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking bitvec v1.0.1 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Checking flate2 v1.0.30 [INFO] [stderr] Compiling syn v2.0.68 [INFO] [stderr] Compiling link-cplusplus v1.0.9 [INFO] [stderr] Compiling cxx v1.0.124 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling is-terminal v0.4.12 [INFO] [stderr] Checking regex-automata v0.4.7 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Checking regex v1.10.5 [INFO] [stderr] Compiling cxx-build v1.0.124 [INFO] [stderr] Checking env_logger v0.9.3 [INFO] [stderr] Compiling cxxbridge-macro v1.0.124 [INFO] [stderr] Compiling thiserror-impl v1.0.61 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling rdkit-sys v0.4.12 [INFO] [stderr] warning: rdkit-sys@0.4.12: In file included from /opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.4.12` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-5e52ca50ccc9bc55/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/rw_mol.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/rw_mol.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/mol_standardize.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/mol_standardize.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/periodic_table.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/periodic_table.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/fingerprint.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/fingerprint.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/substruct_match.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/substruct_match.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/descriptors.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/descriptors.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/mol_ops.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/mol_ops.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/scaffold_network.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/scaffold_network.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/ro_mol.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/ro_mol.h [INFO] [stderr] cargo:CXXBRIDGE_PREFIX=rdkit-sys [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/crate [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/crate [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred: Command "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/6fcb0dbb9a4c74b1-rw_mol.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-867dfdb9d80f0bdb/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc" with args c++ did not execute successfully (status code exit status: 1). [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "0ef95d7baa1e9fe29e1bb085bf13b9169847b01e365514b9a9bf0644f3b29560", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ef95d7baa1e9fe29e1bb085bf13b9169847b01e365514b9a9bf0644f3b29560", kill_on_drop: false }` [INFO] [stdout] 0ef95d7baa1e9fe29e1bb085bf13b9169847b01e365514b9a9bf0644f3b29560